ENSG00000140368

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000379595 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding protein_coding 55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 3.213433 1.751606 3.378189 0.7619762 1.5403421 0.94362364 0.05506667 0.033850 0.064475 0.030625 0.79932013 0.01000891 FALSE TRUE
ENST00000557995 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding protein_coding_CDS_not_defined 55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 6.992678 6.060240 3.136489 4.9287715 3.1364891 -0.94801058 0.11010833 0.103675 0.054525 -0.049150 0.53331556 0.01000891 FALSE TRUE
ENST00000558012 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding protein_coding 55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 17.084971 18.305638 17.974749 4.2224304 4.0283114 -0.02630193 0.33310000 0.388775 0.391450 0.002675 1.00000000 0.01000891 FALSE TRUE
ENST00000559161 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding protein_coding 55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 7.242583 4.351816 2.847079 4.3518156 2.8470791 -0.61038778 0.10986667 0.071100 0.049500 -0.021600 1.00000000 0.01000891 FALSE FALSE
ENST00000559295 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding protein_coding 55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 3.662526 0.000000 7.215912 0.0000000 2.8244417 9.49703580 0.06745000 0.000000 0.145575 0.145575 0.01000891 0.01000891 FALSE TRUE
ENST00000561315 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding retained_intron 55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 2.908108 4.613298 1.017622 1.1862043 1.0176224 -2.16961225 0.05383333 0.096875 0.021975 -0.074900 0.10933084 0.01000891 FALSE TRUE
ENST00000697622 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding retained_intron 55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 5.265259 5.180408 4.230921 0.3108734 0.8771120 -0.29147056 0.09557500 0.106050 0.085350 -0.020700 0.84687562 0.01000891 TRUE TRUE
MSTRG.10000.5 ENSG00000140368 No_inf pgKDN_inf PSTPIP1 protein_coding   55.56784 49.69957 48.68171 3.842749 3.480951 -0.02984743 2.795677 3.737602 2.316799 2.3434109 0.4182312 -0.68762139 0.05450000 0.080775 0.046500 -0.034275 0.99757103 0.01000891 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000140368 E001 0.0000000       15 76993359 76993400 42 +      
ENSG00000140368 E002 0.0000000       15 76994680 76994702 23 +      
ENSG00000140368 E003 0.0000000       15 76994703 76994815 113 +      
ENSG00000140368 E004 0.0000000       15 76995122 76995122 1 +      
ENSG00000140368 E005 0.2459004 0.0161925837 0.9315660354   15 76995123 76995125 3 + 0.099 0.091 -0.144
ENSG00000140368 E006 0.2459004 0.0161925837 0.9315660354   15 76995126 76995130 5 + 0.099 0.091 -0.144
ENSG00000140368 E007 1.4807223 0.1185794872 0.7412106645 0.897357386 15 76995131 76995166 36 + 0.359 0.420 0.341
ENSG00000140368 E008 1.8602433 0.0783286132 0.3416466416 0.633099834 15 76995167 76995171 5 + 0.359 0.522 0.855
ENSG00000140368 E009 4.8154060 0.0340080480 0.3440325984 0.635379753 15 76995172 76995206 35 + 0.687 0.819 0.534
ENSG00000140368 E010 5.3144803 0.0684006589 0.3194480079 0.612145801 15 76995207 76995225 19 + 0.709 0.862 0.611
ENSG00000140368 E011 12.3829150 0.0361303673 0.0557663877 0.235307804 15 76995226 76995361 136 + 0.989 1.214 0.813
ENSG00000140368 E012 8.4234743 0.0018092826 0.0263854370 0.150573713 15 76995362 76995384 23 + 0.840 1.060 0.824
ENSG00000140368 E013 8.1679761 0.0017907072 0.0435473682 0.203648986 15 76995385 76995404 20 + 0.840 1.042 0.758
ENSG00000140368 E014 4.7939881 0.0278176950 0.7030335107 0.879191267 15 76995405 76995411 7 + 0.730 0.787 0.227
ENSG00000140368 E015 4.5569287 0.0221075667 0.4627084560 0.732989873 15 76995412 76995418 7 + 0.687 0.787 0.408
ENSG00000140368 E016 22.2918705 0.0006408515 0.5509124359 0.794935455 15 76995419 76995573 155 + 1.383 1.351 -0.113
ENSG00000140368 E017 11.5052851 0.0040465079 0.4723699087 0.739680012 15 76995574 76995609 36 + 1.126 1.069 -0.206
ENSG00000140368 E018 0.1271363 0.0123481909 0.6000476722   15 76999461 76999614 154 + 0.000 0.091 11.004
ENSG00000140368 E019 0.2543986 0.0160286856 0.2823168132   15 77007847 77008065 219 + 0.000 0.166 12.004
ENSG00000140368 E020 0.1170040 0.0116827940 0.4819750902   15 77015811 77015995 185 + 0.099 0.000 -11.398
ENSG00000140368 E021 24.5653262 0.0005931906 0.7240896895 0.889106452 15 77018148 77018248 101 + 1.392 1.417 0.087
ENSG00000140368 E022 11.5687061 0.0012008495 0.4831719219 0.747877117 15 77018457 77018457 1 + 1.063 1.125 0.226
ENSG00000140368 E023 26.9450294 0.0007241500 0.3397492866 0.631406155 15 77018458 77018531 74 + 1.471 1.421 -0.171
ENSG00000140368 E024 0.7359422 0.0143470277 0.8931920686 0.964545008 15 77023570 77023667 98 + 0.248 0.230 -0.144
ENSG00000140368 E025 1.5763933 0.0086105883 0.3072125126 0.600454220 15 77024013 77024427 415 + 0.486 0.335 -0.823
ENSG00000140368 E026 24.3773635 0.0005545559 0.4781267938 0.744226154 15 77025284 77025318 35 + 1.423 1.385 -0.130
ENSG00000140368 E027 39.5319963 0.0003543403 0.2401989652 0.529422948 15 77025498 77025604 107 + 1.633 1.583 -0.171
ENSG00000140368 E028 0.8795092 0.0133272615 0.0680449357 0.263209895 15 77026116 77026172 57 + 0.099 0.380 2.441
ENSG00000140368 E029 0.0000000       15 77027725 77027745 21 +      
ENSG00000140368 E030 0.2539903 0.0160153085 0.2823374481   15 77027746 77027799 54 + 0.000 0.166 12.004
ENSG00000140368 E031 2.8688170 0.1302053749 0.1231435078 0.371413821 15 77027800 77027851 52 + 0.406 0.695 1.358
ENSG00000140368 E032 18.9007455 0.0007283168 0.0401509044 0.194205567 15 77027852 77027857 6 + 1.364 1.232 -0.462
ENSG00000140368 E033 29.3441837 0.0005606270 0.0017723622 0.023263709 15 77027858 77027914 57 + 1.562 1.398 -0.566
ENSG00000140368 E034 0.0000000       15 77028343 77028423 81 +      
ENSG00000140368 E035 44.3091571 0.0003796467 0.0090714640 0.075456561 15 77028554 77028643 90 + 1.711 1.601 -0.375
ENSG00000140368 E036 25.8167421 0.0009284495 0.3171016766 0.609825703 15 77028644 77028652 9 + 1.455 1.402 -0.185
ENSG00000140368 E037 35.6175238 0.0004080339 0.2594706742 0.551974446 15 77029529 77029574 46 + 1.589 1.538 -0.174
ENSG00000140368 E038 39.7560314 0.0004514849 0.9930445493 1.000000000 15 77030502 77030581 80 + 1.606 1.611 0.016
ENSG00000140368 E039 42.5995092 0.0007952356 0.8373196815 0.941728155 15 77031180 77031278 99 + 1.630 1.644 0.047
ENSG00000140368 E040 47.3584958 0.0042392601 0.0001384077 0.003098747 15 77031279 77032297 1019 + 1.565 1.762 0.668
ENSG00000140368 E041 21.2906963 0.0006148696 0.3018108664 0.595060035 15 77032298 77032316 19 + 1.378 1.318 -0.211
ENSG00000140368 E042 35.4112646 0.0004536984 0.5160836323 0.771828595 15 77032317 77032394 78 + 1.575 1.547 -0.095
ENSG00000140368 E043 4.6695302 0.0077760852 0.7635628681 0.907832368 15 77032395 77032428 34 + 0.730 0.770 0.160
ENSG00000140368 E044 14.3294620 0.0009601066 0.0440240855 0.205055442 15 77032429 77032861 433 + 1.091 1.250 0.566
ENSG00000140368 E045 35.5766251 0.0205383684 0.9101316210 0.971521544 15 77032862 77032952 91 + 1.566 1.558 -0.025
ENSG00000140368 E046 28.8665509 0.0109389840 0.8246023249 0.936375732 15 77035508 77035563 56 + 1.463 1.482 0.064
ENSG00000140368 E047 1.7059538 0.0079302499 0.4636680761 0.733507583 15 77035564 77035629 66 + 0.486 0.380 -0.559
ENSG00000140368 E048 1.5780857 0.1042028242 0.3736569065 0.661435346 15 77035694 77035801 108 + 0.486 0.335 -0.823
ENSG00000140368 E049 16.7773650 0.0009444004 0.1122750744 0.352208590 15 77035802 77035810 9 + 1.181 1.298 0.414
ENSG00000140368 E050 39.9388703 0.0004236874 0.5337310689 0.784110140 15 77035811 77035935 125 + 1.592 1.625 0.114
ENSG00000140368 E051 50.7543967 0.0003513269 0.6582654302 0.857164833 15 77037045 77037475 431 + 1.720 1.706 -0.047

Help

Please Click HERE to learn more details about the results from DEXseq.