ENSG00000141349

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000269097 ENSG00000141349 No_inf pgKDN_inf G6PC3 protein_coding protein_coding 71.54245 66.04847 74.36308 0.7987304 2.557963 0.1710369 22.768101 10.541132 30.595881 2.6189893 2.0215938 1.536411 0.31355833 0.159825 0.414000 0.254175 0.009129065 0.009129065 FALSE TRUE
ENST00000591696 ENSG00000141349 No_inf pgKDN_inf G6PC3 protein_coding protein_coding 71.54245 66.04847 74.36308 0.7987304 2.557963 0.1710369 21.079016 21.883623 18.723334 6.2183451 6.4050635 -0.224903 0.29827500 0.334175 0.258250 -0.075925 0.860464333 0.009129065 FALSE TRUE
ENST00000696383 ENSG00000141349 No_inf pgKDN_inf G6PC3 protein_coding protein_coding 71.54245 66.04847 74.36308 0.7987304 2.557963 0.1710369 2.365965 5.079444 0.000000 3.1085763 0.0000000 -8.991364 0.03463333 0.077000 0.000000 -0.077000 0.475710245 0.009129065 FALSE TRUE
ENST00000696386 ENSG00000141349 No_inf pgKDN_inf G6PC3 protein_coding protein_coding 71.54245 66.04847 74.36308 0.7987304 2.557963 0.1710369 5.841779 12.189204 5.336132 7.1456178 5.3361316 -1.190220 0.08455833 0.182475 0.071200 -0.111275 0.842796678 0.009129065 FALSE TRUE
ENST00000696390 ENSG00000141349 No_inf pgKDN_inf G6PC3 protein_coding protein_coding 71.54245 66.04847 74.36308 0.7987304 2.557963 0.1710369 12.881389 5.195027 15.301317 5.1950274 10.5337905 1.556621 0.17389167 0.078200 0.196925 0.118725 0.846090574 0.009129065 FALSE TRUE
ENST00000696405 ENSG00000141349 No_inf pgKDN_inf G6PC3 protein_coding protein_coding 71.54245 66.04847 74.36308 0.7987304 2.557963 0.1710369 3.013961 5.836458 0.767417 0.9247603 0.4498824 -2.910802 0.04398333 0.088150 0.010750 -0.077400 0.039191178 0.009129065 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000141349 E001 0.0000000       17 44070620 44070700 81 +      
ENSG00000141349 E002 0.0000000       17 44070701 44070714 14 +      
ENSG00000141349 E003 0.0000000       17 44070715 44070729 15 +      
ENSG00000141349 E004 0.0000000       17 44070730 44070734 5 +      
ENSG00000141349 E005 0.0000000       17 44070735 44070744 10 +      
ENSG00000141349 E006 0.1265070 0.0123109650 5.280321e-01   17 44070745 44070787 43 + 0.000 0.096 10.038
ENSG00000141349 E007 0.1265070 0.0123109650 5.280321e-01   17 44070788 44070812 25 + 0.000 0.096 12.045
ENSG00000141349 E008 0.1265070 0.0123109650 5.280321e-01   17 44070813 44070842 30 + 0.000 0.096 12.045
ENSG00000141349 E009 0.1272623 0.0123657654 5.280216e-01   17 44070843 44070853 11 + 0.000 0.096 12.045
ENSG00000141349 E010 0.3724075 0.0166693651 5.718093e-01   17 44070854 44070856 3 + 0.094 0.175 1.032
ENSG00000141349 E011 2.1943881 0.0062222375 6.707375e-01 8.632342e-01 17 44070857 44070877 21 + 0.534 0.474 -0.290
ENSG00000141349 E012 4.5432913 0.0042941630 5.863439e-01 8.165636e-01 17 44070878 44070891 14 + 0.709 0.775 0.267
ENSG00000141349 E013 4.8955566 0.0038492314 9.515534e-01 9.878386e-01 17 44070892 44070892 1 + 0.766 0.775 0.032
ENSG00000141349 E014 9.4406496 0.0014973926 6.702699e-01 8.630208e-01 17 44070893 44070912 20 + 0.998 1.037 0.145
ENSG00000141349 E015 20.4835297 0.0006874079 5.022860e-01 7.620336e-01 17 44070913 44070956 44 + 1.309 1.353 0.153
ENSG00000141349 E016 58.1889503 0.0002847890 2.783398e-02 1.558068e-01 17 44070957 44071166 210 + 1.812 1.730 -0.278
ENSG00000141349 E017 15.8487873 0.0008844100 1.960799e-01 4.766970e-01 17 44071167 44071183 17 + 1.271 1.179 -0.325
ENSG00000141349 E018 1.7238255 0.1571971942 7.112428e-01 8.833253e-01 17 44071184 44071242 59 + 0.390 0.474 0.446
ENSG00000141349 E019 1.1314210 0.0140099114 1.327299e-02 9.655592e-02 17 44071243 44071627 385 + 0.094 0.474 3.032
ENSG00000141349 E020 1.8838889 0.0219875999 3.299891e-03 3.712481e-02 17 44071628 44071811 184 + 0.171 0.625 2.733
ENSG00000141349 E021 0.1170040 0.0116714996 5.485575e-01   17 44071812 44071821 10 + 0.094 0.000 -12.727
ENSG00000141349 E022 5.4200468 0.0029238249 8.984813e-09 6.452556e-07 17 44071822 44073939 2118 + 0.294 1.027 3.318
ENSG00000141349 E023 24.2403436 0.0006227661 7.358119e-02 2.760331e-01 17 44074160 44074229 70 + 1.453 1.348 -0.362
ENSG00000141349 E024 21.9833483 0.0006319605 5.226829e-03 5.124592e-02 17 44074230 44074266 37 + 1.441 1.269 -0.599
ENSG00000141349 E025 26.9692640 0.0006402586 2.022072e-01 4.846591e-01 17 44074680 44074750 71 + 1.481 1.411 -0.243
ENSG00000141349 E026 14.7987996 0.0034689417 7.385703e-01 8.963379e-01 17 44074751 44074770 20 + 1.211 1.186 -0.087
ENSG00000141349 E027 41.2840567 0.0029109527 8.237539e-01 9.360627e-01 17 44074969 44075087 119 + 1.620 1.632 0.041
ENSG00000141349 E028 1.3681018 0.0093955878 1.212063e-01 3.684971e-01 17 44075088 44075309 222 + 0.237 0.474 1.447
ENSG00000141349 E029 68.7379340 0.0002463252 4.660875e-01 7.349130e-01 17 44075310 44075451 142 + 1.855 1.831 -0.081
ENSG00000141349 E030 70.3223072 0.0102435218 5.358876e-01 7.853253e-01 17 44075680 44075818 139 + 1.867 1.839 -0.094
ENSG00000141349 E031 193.6847351 0.0033876408 3.827775e-01 6.689748e-01 17 44075819 44076344 526 + 2.300 2.279 -0.070
ENSG00000141349 E032 0.0000000       17 44077197 44077331 135 +      
ENSG00000141349 E033 0.0000000       17 44077332 44078104 773 +      
ENSG00000141349 E034 0.1271363 0.0123691596 5.279409e-01   17 44080098 44080100 3 + 0.000 0.096 12.045
ENSG00000141349 E035 24.1267219 0.0006092188 7.823690e-26 3.375703e-23 17 44080101 44082151 2051 + 0.891 1.619 2.582

Help

Please Click HERE to learn more details about the results from DEXseq.