ENSG00000141526

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000582743 ENSG00000141526 No_inf pgKDN_inf SLC16A3 protein_coding protein_coding 350.0009 117.5152 385.1769 1.207643 5.64052 1.712588 141.78362 48.61334 154.37193 2.684154 8.306621 1.666783 0.4069500 0.413125 0.4013 -0.011825 0.93889556 5.766695e-06 FALSE TRUE
ENST00000584689 ENSG00000141526 No_inf pgKDN_inf SLC16A3 protein_coding protein_coding 350.0009 117.5152 385.1769 1.207643 5.64052 1.712588 37.25105 12.17354 44.99749 1.998579 4.876840 1.885232 0.1071083 0.104075 0.1174 0.013325 0.87313175 5.766695e-06 FALSE TRUE
ENST00000584781 ENSG00000141526 No_inf pgKDN_inf SLC16A3 protein_coding protein_coding_CDS_not_defined 350.0009 117.5152 385.1769 1.207643 5.64052 1.712588 128.09040 31.42753 143.92477 1.392888 9.744343 2.194855 0.3403917 0.267175 0.3728 0.105625 0.04521159 5.766695e-06 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000141526 E001 0.8624492 1.284874e-02 1.034051e-01 3.361493e-01 17 82217934 82218045 112 + 0.161 0.414 1.826
ENSG00000141526 E002 3.7890468 7.714535e-02 4.237332e-02 2.005584e-01 17 82218046 82218184 139 + 0.531 0.844 1.319
ENSG00000141526 E003 1.4426818 9.338337e-03 8.493202e-01 9.464305e-01 17 82228397 82228420 24 + 0.371 0.342 -0.173
ENSG00000141526 E004 3.1401036 4.341982e-03 7.114680e-01 8.833983e-01 17 82228421 82228447 27 + 0.568 0.623 0.242
ENSG00000141526 E005 12.6675279 1.060260e-03 6.410692e-01 8.476061e-01 17 82228448 82228529 82 + 1.083 1.126 0.157
ENSG00000141526 E006 2.5035075 5.626673e-03 1.527950e-01 4.169712e-01 17 82228530 82228545 16 + 0.568 0.342 -1.173
ENSG00000141526 E007 0.6010024 1.960229e-01 8.081216e-01 9.291769e-01 17 82228998 82229041 44 + 0.204 0.146 -0.589
ENSG00000141526 E008 0.6010024 1.960229e-01 8.081216e-01 9.291769e-01 17 82229042 82229044 3 + 0.204 0.146 -0.589
ENSG00000141526 E009 2.3812830 2.107685e-01 1.655510e-01 4.353090e-01 17 82229045 82229054 10 + 0.569 0.255 -1.759
ENSG00000141526 E010 2.5074078 1.862235e-01 2.650112e-01 5.580632e-01 17 82229055 82229057 3 + 0.568 0.342 -1.173
ENSG00000141526 E011 5.1651169 2.711682e-03 5.344021e-01 7.844699e-01 17 82229058 82229059 2 + 0.775 0.698 -0.311
ENSG00000141526 E012 8.4069237 1.642078e-03 3.838995e-01 6.700289e-01 17 82229060 82229061 2 + 0.959 0.869 -0.343
ENSG00000141526 E013 20.4013359 6.708708e-04 1.305312e-01 3.832730e-01 17 82229062 82229067 6 + 1.318 1.209 -0.385
ENSG00000141526 E014 79.7780997 2.556078e-04 6.137342e-02 2.487936e-01 17 82229068 82229092 25 + 1.884 1.815 -0.232
ENSG00000141526 E015 90.9360563 5.301031e-04 4.505322e-02 2.075419e-01 17 82229093 82229106 14 + 1.940 1.870 -0.237
ENSG00000141526 E016 41.7205758 3.915390e-04 1.415441e-44 1.696453e-41 17 82229107 82231926 2820 + 1.279 1.943 2.267
ENSG00000141526 E017 2.9656072 5.385010e-03 4.208432e-04 7.629498e-03 17 82232232 82232359 128 + 0.371 0.844 2.149
ENSG00000141526 E018 32.5187862 6.699218e-04 4.427138e-41 4.189004e-38 17 82233687 82234898 1212 + 1.134 1.858 2.495
ENSG00000141526 E019 3.5083355 4.770338e-03 2.788325e-09 2.205067e-07 17 82234899 82235000 102 + 0.243 1.008 3.614
ENSG00000141526 E020 3.3534780 5.041118e-03 5.100881e-06 1.914481e-04 17 82235001 82235052 52 + 0.342 0.934 2.660
ENSG00000141526 E021 7.0623917 1.960091e-03 1.183946e-09 9.930783e-08 17 82235053 82235229 177 + 0.586 1.209 2.412
ENSG00000141526 E022 16.5056899 1.104914e-03 3.730706e-22 1.234429e-19 17 82235230 82235773 544 + 0.863 1.572 2.527
ENSG00000141526 E023 3.4996815 7.730758e-03 4.109151e-08 2.607329e-06 17 82235774 82235842 69 + 0.279 0.991 3.286
ENSG00000141526 E024 4.7322055 1.321023e-02 2.250050e-08 1.498200e-06 17 82235843 82235982 140 + 0.398 1.086 2.897
ENSG00000141526 E025 189.2752909 9.379375e-05 2.506760e-01 5.417518e-01 17 82235983 82236050 68 + 2.244 2.219 -0.083
ENSG00000141526 E026 166.9185180 1.113912e-04 8.460716e-02 3.005454e-01 17 82236051 82236128 78 + 2.194 2.152 -0.140
ENSG00000141526 E027 244.6247847 9.072878e-05 1.223379e-01 3.700185e-01 17 82236129 82236231 103 + 2.356 2.326 -0.099
ENSG00000141526 E028 2.3248043 4.573152e-02 8.864981e-02 3.088656e-01 17 82236232 82236473 242 + 0.398 0.662 1.260
ENSG00000141526 E029 1.2454041 1.011427e-01 1.154895e-02 8.847741e-02 17 82236474 82236667 194 + 0.161 0.579 2.634
ENSG00000141526 E030 1.3611120 7.751171e-02 2.286220e-02 1.378646e-01 17 82236668 82236728 61 + 0.204 0.579 2.219
ENSG00000141526 E031 266.7674959 9.067291e-05 3.657606e-01 6.542713e-01 17 82236729 82236844 116 + 2.389 2.374 -0.051
ENSG00000141526 E032 151.1540758 2.453944e-03 5.987859e-01 8.240431e-01 17 82236845 82236872 28 + 2.144 2.130 -0.047
ENSG00000141526 E033 3.1548063 2.737869e-02 2.553285e-01 5.472455e-01 17 82236873 82237137 265 + 0.532 0.698 0.734
ENSG00000141526 E034 148.5602735 1.268030e-03 9.073798e-02 3.128567e-01 17 82237138 82237169 32 + 2.146 2.096 -0.167
ENSG00000141526 E035 1009.5583645 4.033812e-05 4.501059e-07 2.249862e-05 17 82237170 82237893 724 + 2.974 2.930 -0.144
ENSG00000141526 E036 268.9028515 8.368009e-05 6.565980e-01 8.563072e-01 17 82238702 82238810 109 + 2.385 2.397 0.040
ENSG00000141526 E037 388.1298805 1.053464e-04 4.075076e-01 6.899983e-01 17 82238811 82239362 552 + 2.550 2.540 -0.035
ENSG00000141526 E038 28.4304070 5.779584e-04 3.718169e-02 1.856297e-01 17 82239363 82240086 724 + 1.461 1.330 -0.455
ENSG00000141526 E039 0.8799150 1.341471e-02 1.435351e-03 1.975356e-02 17 82260899 82261129 231 + 0.061 0.531 3.996

Help

Please Click HERE to learn more details about the results from DEXseq.