ENSG00000141556

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000571796 ENSG00000141556 No_inf pgKDN_inf TBCD protein_coding retained_intron 25.98781 19.54092 28.40843 3.069993 1.796892 0.5395903 1.4032228 0.0000000 1.793023 0.0000000 0.7082021 7.494274 0.05114167 0.000000 0.068350 0.068350 0.11552824 0.03818245 FALSE TRUE
ENST00000574818 ENSG00000141556 No_inf pgKDN_inf TBCD protein_coding retained_intron 25.98781 19.54092 28.40843 3.069993 1.796892 0.5395903 3.0496600 4.8756123 1.362939 0.9061403 1.3629389 -1.831272 0.13265833 0.262250 0.040925 -0.221325 0.03818245 0.03818245 FALSE FALSE
ENST00000575132 ENSG00000141556 No_inf pgKDN_inf TBCD protein_coding retained_intron 25.98781 19.54092 28.40843 3.069993 1.796892 0.5395903 8.6363741 5.1140745 11.560081 2.2273200 0.5333531 1.175036 0.31887500 0.237025 0.411875 0.174850 0.62279700 0.03818245   FALSE
MSTRG.13565.21 ENSG00000141556 No_inf pgKDN_inf TBCD protein_coding   25.98781 19.54092 28.40843 3.069993 1.796892 0.5395903 6.7267765 3.0777575 8.169375 0.6224137 0.6918684 1.405431 0.25593333 0.175775 0.291725 0.115950 0.56146687 0.03818245 FALSE TRUE
MSTRG.13565.28 ENSG00000141556 No_inf pgKDN_inf TBCD protein_coding   25.98781 19.54092 28.40843 3.069993 1.796892 0.5395903 0.5644463 0.9006469 0.000000 0.5354300 0.0000000 -6.508820 0.02605000 0.053075 0.000000 -0.053075 0.45215547 0.03818245 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000141556 E001 0.0000000       17 82752042 82752047 6 +      
ENSG00000141556 E002 0.0000000       17 82752048 82752050 3 +      
ENSG00000141556 E003 0.0000000       17 82752051 82752056 6 +      
ENSG00000141556 E004 0.0000000       17 82752057 82752057 1 +      
ENSG00000141556 E005 0.0000000       17 82752058 82752061 4 +      
ENSG00000141556 E006 0.0000000       17 82752062 82752063 2 +      
ENSG00000141556 E007 0.0000000       17 82752064 82752064 1 +      
ENSG00000141556 E008 0.0000000       17 82752065 82752067 3 +      
ENSG00000141556 E009 0.1170040 0.0117129525 6.692724e-01   17 82752068 82752073 6 + 0.085 0.000 -12.736
ENSG00000141556 E010 1.2247311 0.0143655744 7.290447e-01 8.919808e-01 17 82752074 82752138 65 + 0.319 0.377 0.352
ENSG00000141556 E011 1.8326858 0.0112430994 8.672119e-01 9.542307e-01 17 82752139 82752157 19 + 0.437 0.468 0.159
ENSG00000141556 E012 2.5877627 0.0141795417 2.594077e-01 5.519526e-01 17 82752158 82752193 36 + 0.470 0.635 0.767
ENSG00000141556 E013 6.6988164 0.0021671841 6.899616e-01 8.726122e-01 17 82752194 82752377 184 + 0.899 0.867 -0.125
ENSG00000141556 E014 0.0000000       17 82752575 82752612 38 +      
ENSG00000141556 E015 0.0000000       17 82752613 82752754 142 +      
ENSG00000141556 E016 0.0000000       17 82752755 82752948 194 +      
ENSG00000141556 E017 4.3540058 0.0034573813 1.761553e-01 4.502943e-01 17 82756165 82756215 51 + 0.792 0.635 -0.648
ENSG00000141556 E018 0.0000000       17 82759511 82759600 90 +      
ENSG00000141556 E019 0.2543986 0.0159902642 1.758107e-01   17 82763041 82763964 924 + 0.000 0.191 14.335
ENSG00000141556 E020 6.2613265 0.0023062773 9.316722e-03 7.680955e-02 17 82763965 82764062 98 + 0.965 0.688 -1.089
ENSG00000141556 E021 5.6129023 0.0026230455 8.769366e-01 9.582473e-01 17 82766267 82766368 102 + 0.807 0.833 0.100
ENSG00000141556 E022 0.0000000       17 82767462 82767584 123 +      
ENSG00000141556 E023 0.2536433 0.0160733124 1.756411e-01   17 82768193 82768216 24 + 0.000 0.191 14.335
ENSG00000141556 E024 6.3265368 0.0022965602 5.517097e-01 7.955052e-01 17 82768420 82768566 147 + 0.887 0.833 -0.210
ENSG00000141556 E025 0.6179036 0.0188237955 4.905521e-01 7.531509e-01 17 82768567 82769861 1295 + 0.156 0.262 0.937
ENSG00000141556 E026 3.9729500 0.0595329015 9.822078e-02 3.269015e-01 17 82772452 82772507 56 + 0.792 0.543 -1.063
ENSG00000141556 E027 0.0000000       17 82780839 82780922 84 +      
ENSG00000141556 E028 5.8053117 0.0276795265 2.708890e-01 5.645991e-01 17 82781589 82781721 133 + 0.887 0.756 -0.515
ENSG00000141556 E029 0.6258633 0.0433168534 1.160246e-01 3.591820e-01 17 82783621 82783714 94 + 0.085 0.323 2.352
ENSG00000141556 E030 3.8962193 0.0044853109 9.315850e-01 9.800034e-01 17 82797757 82797802 46 + 0.690 0.688 -0.011
ENSG00000141556 E031 6.8033537 0.0510166656 7.022392e-01 8.788418e-01 17 82800864 82800996 133 + 0.911 0.867 -0.168
ENSG00000141556 E032 0.0000000       17 82805258 82805447 190 +      
ENSG00000141556 E033 6.1761903 0.0111794675 2.061238e-01 4.897392e-01 17 82805875 82806011 137 + 0.911 0.776 -0.523
ENSG00000141556 E034 4.0151981 0.0132466959 5.727038e-01 8.085071e-01 17 82807608 82807668 61 + 0.727 0.662 -0.270
ENSG00000141556 E035 5.2220728 0.0054809084 3.406397e-01 6.322330e-01 17 82809708 82809782 75 + 0.836 0.734 -0.403
ENSG00000141556 E036 7.1813970 0.0471860501 7.429637e-01 8.983949e-01 17 82814840 82814934 95 + 0.922 0.898 -0.091
ENSG00000141556 E037 0.0000000       17 82814935 82815406 472 +      
ENSG00000141556 E038 0.0000000       17 82830496 82830717 222 +      
ENSG00000141556 E039 0.0000000       17 82845584 82846121 538 +      
ENSG00000141556 E040 0.0000000       17 82858519 82858595 77 +      
ENSG00000141556 E041 0.0000000       17 82858596 82858667 72 +      
ENSG00000141556 E042 0.0000000       17 82860394 82860449 56 +      
ENSG00000141556 E043 0.0000000       17 82864291 82864427 137 +      
ENSG00000141556 E044 0.0000000       17 82866985 82867125 141 +      
ENSG00000141556 E045 0.0000000       17 82867818 82868032 215 +      
ENSG00000141556 E046 10.8454190 0.0013824299 7.317768e-01 8.933837e-01 17 82870224 82870380 157 + 1.081 1.061 -0.073
ENSG00000141556 E047 0.0000000       17 82881494 82881723 230 +      
ENSG00000141556 E048 4.1528256 0.0255107021 9.726293e-01 9.948942e-01 17 82884145 82884151 7 + 0.709 0.712 0.010
ENSG00000141556 E049 5.7478268 0.0097168016 7.543547e-01 9.033500e-01 17 82884152 82884202 51 + 0.807 0.850 0.167
ENSG00000141556 E050 0.0000000       17 82884801 82884936 136 +      
ENSG00000141556 E051 0.1271363 0.0123306425 4.305577e-01   17 82886084 82886284 201 + 0.000 0.106 13.335
ENSG00000141556 E052 4.0110253 0.0126666970 5.738623e-01 8.090234e-01 17 82889668 82889697 30 + 0.727 0.662 -0.270
ENSG00000141556 E053 0.3807797 0.0262419341 6.836381e-02   17 82890697 82891713 1017 + 0.000 0.262 14.920
ENSG00000141556 E054 0.0000000       17 82893064 82893107 44 +      
ENSG00000141556 E055 0.1170040 0.0117129525 6.692724e-01   17 82893108 82893196 89 + 0.085 0.000 -12.737
ENSG00000141556 E056 6.7663243 0.0023858906 6.080281e-02 2.474915e-01 17 82893547 82893632 86 + 0.965 0.776 -0.726
ENSG00000141556 E057 0.1170040 0.0117129525 6.692724e-01   17 82895701 82895824 124 + 0.085 0.000 -12.737
ENSG00000141556 E058 0.1170040 0.0117129525 6.692724e-01   17 82895825 82895967 143 + 0.085 0.000 -12.737
ENSG00000141556 E059 0.1186381 0.0118277860 6.692471e-01   17 82895968 82895990 23 + 0.085 0.000 -12.737
ENSG00000141556 E060 0.0000000       17 82899456 82899500 45 +      
ENSG00000141556 E061 0.0000000       17 82900542 82900650 109 +      
ENSG00000141556 E062 7.5143528 0.0020021456 1.515110e-01 4.149013e-01 17 82900651 82900731 81 + 0.985 0.850 -0.511
ENSG00000141556 E063 0.1272623 0.0123284975 4.305716e-01   17 82902393 82903404 1012 + 0.000 0.106 13.335
ENSG00000141556 E064 6.7960942 0.0021226865 2.912217e-01 5.847678e-01 17 82903405 82903478 74 + 0.934 0.833 -0.385
ENSG00000141556 E065 9.3846106 0.0018319307 7.713971e-01 9.118412e-01 17 82905936 82906053 118 + 1.023 1.005 -0.063
ENSG00000141556 E066 0.3810317 0.0255569302 6.831150e-02   17 82906175 82906557 383 + 0.000 0.262 14.920
ENSG00000141556 E067 7.3300670 0.0171411961 9.320381e-01 9.801993e-01 17 82907761 82907821 61 + 0.911 0.928 0.062
ENSG00000141556 E068 0.2454921 0.0163338771 8.637881e-01   17 82908091 82908276 186 + 0.085 0.106 0.352
ENSG00000141556 E069 0.1268540 0.0123577614 4.304330e-01   17 82908277 82908296 20 + 0.000 0.106 13.335
ENSG00000141556 E070 0.4974987 0.0370466536 2.291338e-01   17 82908297 82908437 141 + 0.085 0.262 1.937
ENSG00000141556 E071 1.6401543 0.0083203349 2.717443e-04 5.364662e-03 17 82908438 82909284 847 + 0.085 0.635 3.937
ENSG00000141556 E072 5.3921471 0.0027865998 4.683285e-01 7.365378e-01 17 82909285 82909307 23 + 0.761 0.850 0.352
ENSG00000141556 E073 6.9891857 0.0020506031 3.373628e-01 6.291170e-01 17 82911758 82911789 32 + 0.849 0.955 0.402
ENSG00000141556 E074 0.2541163 0.0160525998 1.756909e-01   17 82913011 82913149 139 + 0.000 0.191 14.335
ENSG00000141556 E075 0.7175330 0.0134595216 1.546160e-01 4.200615e-01 17 82913340 82914153 814 + 0.319 0.106 -1.970
ENSG00000141556 E076 0.8701297 0.0131242900 1.536803e-01 4.185101e-01 17 82920192 82920459 268 + 0.156 0.377 1.674
ENSG00000141556 E077 0.3804973 0.0159447740 6.707215e-02   17 82920460 82920555 96 + 0.000 0.262 14.920
ENSG00000141556 E078 7.5581855 0.0019572440 8.794933e-01 9.593376e-01 17 82920556 82920618 63 + 0.934 0.928 -0.023
ENSG00000141556 E079 1.4810431 0.0092474187 3.423397e-01 6.337527e-01 17 82920619 82921500 882 + 0.319 0.468 0.837
ENSG00000141556 E080 8.4815766 0.0016832857 1.361472e-01 3.924199e-01 17 82921501 82921577 77 + 1.031 0.898 -0.496
ENSG00000141556 E081 9.6094653 0.0016913066 4.737004e-01 7.406882e-01 17 82923652 82923733 82 + 1.049 0.993 -0.203
ENSG00000141556 E082 0.0000000       17 82924139 82924231 93 +      
ENSG00000141556 E083 12.4420542 0.0020535889 9.373113e-01 9.820871e-01 17 82924939 82925057 119 + 1.126 1.128 0.011
ENSG00000141556 E084 12.1284552 0.0016788508 1.634836e-01 4.323064e-01 17 82926400 82926491 92 + 1.057 1.179 0.439
ENSG00000141556 E085 0.1271363 0.0123306425 4.305577e-01   17 82926866 82927185 320 + 0.000 0.106 13.335
ENSG00000141556 E086 18.8303610 0.0007972381 1.904457e-01 4.695972e-01 17 82927186 82927323 138 + 1.330 1.252 -0.272
ENSG00000141556 E087 13.9864769 0.0010506843 3.262591e-01 6.187797e-01 17 82927905 82927988 84 + 1.203 1.137 -0.233
ENSG00000141556 E088 7.0579276 0.0346631997 6.711013e-01 8.634964e-01 17 82929113 82929137 25 + 0.923 0.883 -0.151
ENSG00000141556 E089 12.6015766 0.0011255430 6.355619e-02 2.536767e-01 17 82929138 82929271 134 + 1.191 1.050 -0.505
ENSG00000141556 E090 13.2477355 0.0375967815 2.068996e-01 4.905452e-01 17 82929362 82929500 139 + 1.081 1.224 0.512
ENSG00000141556 E091 2.6117724 0.0056540296 1.351985e-02 9.779768e-02 17 82929501 82929865 365 + 0.362 0.712 1.674
ENSG00000141556 E092 2.6203941 0.0635797704 1.006053e-02 8.063671e-02 17 82929866 82930243 378 + 0.319 0.734 2.029
ENSG00000141556 E093 1.2593127 0.0100113507 2.652282e-03 3.145013e-02 17 82930244 82930457 214 + 0.085 0.543 3.522
ENSG00000141556 E094 1.0073363 0.2233718007 4.485107e-02 2.070791e-01 17 82930458 82930521 64 + 0.085 0.468 3.160
ENSG00000141556 E095 13.1333068 0.0011021288 6.806358e-02 2.632205e-01 17 82930522 82930643 122 + 1.073 1.224 0.541
ENSG00000141556 E096 0.0000000       17 82931949 82932139 191 +      
ENSG00000141556 E097 6.1257282 0.0024287443 4.395190e-01 7.155152e-01 17 82932658 82932686 29 + 0.807 0.898 0.352
ENSG00000141556 E098 7.6776296 0.0098807574 7.971392e-01 9.234268e-01 17 82932687 82932735 49 + 0.945 0.928 -0.063
ENSG00000141556 E099 0.2542726 0.2292382334 2.206692e-01   17 82932736 82932855 120 + 0.000 0.191 14.335
ENSG00000141556 E100 0.2536433 0.0160733124 1.756411e-01   17 82937216 82937270 55 + 0.000 0.191 14.335
ENSG00000141556 E101 13.7323721 0.0720703302 4.131785e-01 6.940421e-01 17 82937271 82937360 90 + 1.203 1.120 -0.297
ENSG00000141556 E102 0.3809057 0.0158568451 6.714777e-02   17 82937361 82937569 209 + 0.000 0.262 14.920
ENSG00000141556 E103 0.3810317 0.0255569302 6.831150e-02   17 82937570 82937845 276 + 0.000 0.262 14.920
ENSG00000141556 E104 0.2448930 0.0164351142 8.645150e-01   17 82937846 82937959 114 + 0.085 0.106 0.352
ENSG00000141556 E105 14.0785280 0.0039218158 1.624265e-01 4.308306e-01 17 82938049 82938136 88 + 1.220 1.119 -0.359
ENSG00000141556 E106 0.1268540 0.0123577614 4.304330e-01   17 82939042 82939366 325 + 0.000 0.106 13.335
ENSG00000141556 E107 8.3993646 0.0019012243 6.803843e-01 8.681218e-01 17 82939367 82939400 34 + 0.985 0.955 -0.112
ENSG00000141556 E108 13.4638270 0.0019888463 4.400351e-01 7.158480e-01 17 82939401 82939476 76 + 1.126 1.195 0.247
ENSG00000141556 E109 0.3628435 0.0165743854 7.293255e-01   17 82941148 82941398 251 + 0.156 0.106 -0.648
ENSG00000141556 E110 8.4657081 0.0205111779 3.488416e-01 6.393946e-01 17 82941399 82941483 85 + 0.923 1.028 0.393
ENSG00000141556 E111 0.1187032 0.0117942284 6.693337e-01   17 82941484 82942448 965 + 0.085 0.000 -12.737
ENSG00000141556 E112 7.4824716 0.0019732728 1.768795e-06 7.650214e-05 17 82942449 82945914 3466 + 0.628 1.128 1.937

Help

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