ENSG00000141562

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000457415 ENSG00000141562 No_inf pgKDN_inf NARF protein_coding protein_coding 38.74419 40.76399 41.96908 3.266305 4.800603 0.04202161 9.556571 9.4303244 10.7285012 1.0405162 2.11057112 0.1858843 0.25075000 0.240100 0.255700 0.015600 0.97602311 0.006192202 FALSE  
ENST00000579198 ENSG00000141562 No_inf pgKDN_inf NARF protein_coding protein_coding 38.74419 40.76399 41.96908 3.266305 4.800603 0.04202161 3.410964 2.9238434 2.4990160 0.3724678 0.93282210 -0.2256702 0.09640000 0.075225 0.067400 -0.007825 0.87429244 0.006192202    
ENST00000581202 ENSG00000141562 No_inf pgKDN_inf NARF protein_coding nonsense_mediated_decay 38.74419 40.76399 41.96908 3.266305 4.800603 0.04202161 1.989425 2.5961211 1.7461379 0.2966364 0.64255960 -0.5694980 0.05367500 0.066825 0.045525 -0.021300 0.83424814 0.006192202 TRUE  
ENST00000581743 ENSG00000141562 No_inf pgKDN_inf NARF protein_coding protein_coding_CDS_not_defined 38.74419 40.76399 41.96908 3.266305 4.800603 0.04202161 2.133491 0.8268746 5.5735986 0.5338899 3.24719580 2.7381119 0.04453333 0.022375 0.111225 0.088850 0.86741695 0.006192202 FALSE  
ENST00000582907 ENSG00000141562 No_inf pgKDN_inf NARF protein_coding nonsense_mediated_decay 38.74419 40.76399 41.96908 3.266305 4.800603 0.04202161 11.914083 9.2224705 13.7858886 0.3001618 2.96281990 0.5794497 0.32624167 0.231100 0.360650 0.129550 0.79444806 0.006192202 FALSE  
ENST00000584445 ENSG00000141562 No_inf pgKDN_inf NARF protein_coding retained_intron 38.74419 40.76399 41.96908 3.266305 4.800603 0.04202161 1.406871 2.3977034 0.3901491 0.1436395 0.09754129 -2.5890483 0.03823333 0.060825 0.009525 -0.051300 0.02506335 0.006192202 FALSE  
ENST00000584513 ENSG00000141562 No_inf pgKDN_inf NARF protein_coding protein_coding 38.74419 40.76399 41.96908 3.266305 4.800603 0.04202161 6.139828 10.4190930 5.7764241 3.6952319 3.37453347 -0.8498697 0.13560833 0.236750 0.115200 -0.121550 0.82154559 0.006192202 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000141562 E001 0.0000000       17 82458180 82458184 5 +      
ENSG00000141562 E002 0.0000000       17 82458185 82458193 9 +      
ENSG00000141562 E003 0.1265070 0.0122834410 5.690099e-01   17 82458194 82458227 34 + 0.000 0.094 10.036
ENSG00000141562 E004 1.6057187 0.0603423744 4.951434e-01 0.7564453878 17 82458228 82458358 131 + 0.351 0.466 0.626
ENSG00000141562 E005 0.6255163 0.0152116991 1.925020e-01 0.4724095657 17 82458359 82458508 150 + 0.097 0.293 1.948
ENSG00000141562 E006 0.0000000       17 82458509 82458517 9 +      
ENSG00000141562 E007 0.0000000       17 82458649 82458663 15 +      
ENSG00000141562 E008 0.1268540 0.0123181805 5.689943e-01   17 82458664 82458696 33 + 0.000 0.094 12.341
ENSG00000141562 E009 0.1268540 0.0123181805 5.689943e-01   17 82458697 82458697 1 + 0.000 0.094 12.341
ENSG00000141562 E010 0.3716209 0.0165492861 6.189722e-01   17 82458698 82458702 5 + 0.097 0.170 0.948
ENSG00000141562 E011 1.1067454 0.0490238450 8.142420e-01 0.9321042301 17 82458703 82458710 8 + 0.300 0.343 0.270
ENSG00000141562 E012 1.1067454 0.0490238450 8.142420e-01 0.9321042301 17 82458711 82458711 1 + 0.300 0.343 0.270
ENSG00000141562 E013 1.5866538 0.0212935505 7.204962e-01 0.8874416213 17 82458712 82458713 2 + 0.438 0.388 -0.274
ENSG00000141562 E014 2.6758417 0.0095696504 3.386671e-01 0.6303024551 17 82458714 82458723 10 + 0.627 0.500 -0.583
ENSG00000141562 E015 2.7945448 0.0066090414 2.471844e-01 0.5377613781 17 82458724 82458725 2 + 0.652 0.500 -0.689
ENSG00000141562 E016 5.0165966 0.0029763819 7.448863e-01 0.8989720354 17 82458726 82458740 15 + 0.795 0.764 -0.122
ENSG00000141562 E017 6.1021313 0.0024461976 4.534307e-01 0.7261479935 17 82458741 82458745 5 + 0.888 0.815 -0.283
ENSG00000141562 E018 6.9366683 0.0021475954 1.651217e-01 0.4346635063 17 82458746 82458753 8 + 0.965 0.831 -0.511
ENSG00000141562 E019 11.0589717 0.0019638636 2.525050e-02 0.1462164789 17 82458754 82458830 77 + 1.168 0.985 -0.663
ENSG00000141562 E020 0.0000000       17 82458875 82459123 249 +      
ENSG00000141562 E021 0.1265070 0.0122834410 5.690099e-01   17 82459275 82459448 174 + 0.000 0.094 12.341
ENSG00000141562 E022 4.8657025 0.0301214961 2.018868e-01 0.4842588405 17 82459992 82459999 8 + 0.844 0.685 -0.637
ENSG00000141562 E023 16.9722634 0.0009824266 1.835701e-04 0.0038994364 17 82460000 82460072 73 + 1.370 1.115 -0.900
ENSG00000141562 E024 0.2537694 0.0160297274 2.620018e-01   17 82460073 82460323 251 + 0.000 0.170 13.261
ENSG00000141562 E025 0.3714026 0.0165965881 6.182536e-01   17 82460324 82460705 382 + 0.097 0.170 0.948
ENSG00000141562 E026 0.0000000       17 82460971 82461014 44 +      
ENSG00000141562 E027 32.1992604 0.0005573365 2.934296e-05 0.0008508511 17 82464287 82464430 144 + 1.617 1.411 -0.705
ENSG00000141562 E028 0.7622843 0.0141466802 1.132570e-02 0.0873002931 17 82468499 82468763 265 + 0.000 0.388 14.661
ENSG00000141562 E029 28.0117812 0.0009607981 3.751104e-01 0.6627219068 17 82468764 82468896 133 + 1.483 1.442 -0.140
ENSG00000141562 E030 24.9568908 0.0128263322 6.388113e-01 0.8463398943 17 82472564 82472698 135 + 1.430 1.399 -0.108
ENSG00000141562 E031 0.8728367 0.1923011364 3.566731e-01 0.6465285112 17 82478571 82478667 97 + 0.176 0.343 1.269
ENSG00000141562 E032 21.0578011 0.0008076862 7.187236e-01 0.8867963017 17 82478800 82478918 119 + 1.351 1.336 -0.052
ENSG00000141562 E033 0.3798680 0.0283155084 1.160564e-01   17 82478919 82479206 288 + 0.000 0.236 13.761
ENSG00000141562 E034 1.2586252 0.3548059916 9.975336e-02 0.3299763128 17 82479938 82479993 56 + 0.097 0.500 3.118
ENSG00000141562 E035 0.6164218 0.0168799489 7.006913e-01 0.8781003091 17 82480407 82480467 61 + 0.176 0.236 0.533
ENSG00000141562 E036 1.1333375 0.0756473005 2.608941e-02 0.1493964993 17 82480468 82480544 77 + 0.097 0.466 2.948
ENSG00000141562 E037 1.8874393 0.0073803075 4.063805e-03 0.0429170238 17 82480545 82480998 454 + 0.176 0.615 2.648
ENSG00000141562 E038 0.7526526 0.0134169462 1.060963e-01 0.3410278273 17 82480999 82481080 82 + 0.097 0.343 2.270
ENSG00000141562 E039 0.3804973 0.0158262886 1.141753e-01   17 82481081 82481081 1 + 0.000 0.236 13.789
ENSG00000141562 E040 22.7641351 0.0006147118 5.986924e-01 0.8240431137 17 82481082 82481211 130 + 1.388 1.364 -0.083
ENSG00000141562 E041 0.1187032 0.0119323139 5.087924e-01   17 82481212 82481218 7 + 0.097 0.000 -13.086
ENSG00000141562 E042 1.2316187 0.0110600283 5.887307e-01 0.8175862991 17 82483174 82483304 131 + 0.300 0.388 0.533
ENSG00000141562 E043 12.6020334 0.0037124875 7.168532e-01 0.8859072025 17 82483716 82483742 27 + 1.145 1.123 -0.080
ENSG00000141562 E044 16.8757012 0.0008935111 5.073420e-01 0.7658050679 17 82483743 82483779 37 + 1.272 1.233 -0.136
ENSG00000141562 E045 24.0954766 0.0074419772 2.394292e-06 0.0000988773 17 82483780 82484538 759 + 1.189 1.528 1.178
ENSG00000141562 E046 13.1774083 0.0010803153 4.730410e-05 0.0012750122 17 82484539 82484807 269 + 0.941 1.279 1.223
ENSG00000141562 E047 2.6012646 0.0055845695 1.599720e-01 0.4275271362 17 82484808 82484812 5 + 0.438 0.640 0.948
ENSG00000141562 E048 34.4463774 0.0004999486 9.360185e-01 0.9816863605 17 82484813 82484930 118 + 1.543 1.555 0.040
ENSG00000141562 E049 18.1767061 0.0301659927 7.032803e-01 0.8792164070 17 82484931 82484950 20 + 1.254 1.306 0.182
ENSG00000141562 E050 44.8615337 0.0003312536 1.398443e-01 0.3977828438 17 82485497 82485654 158 + 1.622 1.693 0.241
ENSG00000141562 E051 45.3450029 0.0006272922 8.276895e-01 0.9376308985 17 82487916 82488201 286 + 1.666 1.665 -0.005
ENSG00000141562 E052 3.6837930 0.0084919208 8.316716e-01 0.9392419616 17 82488202 82488220 19 + 0.652 0.685 0.141
ENSG00000141562 E053 8.7207140 0.0021583279 7.180655e-01 0.8865318345 17 82488221 82490537 2317 + 0.965 1.006 0.151

Help

Please Click HERE to learn more details about the results from DEXseq.