ENSG00000142347

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000596937 ENSG00000142347 No_inf pgKDN_inf MYO1F protein_coding retained_intron 139.4764 155.4031 125.3046 5.95869 2.790938 -0.3105537 6.031959 13.558580 2.324988 3.832721 2.324988 -2.5387824 0.03954167 0.085125 0.017675 -0.067450 0.03383959 0.03383959   FALSE
ENST00000644032 ENSG00000142347 No_inf pgKDN_inf MYO1F protein_coding protein_coding 139.4764 155.4031 125.3046 5.95869 2.790938 -0.3105537 7.119863 7.627188 8.815254 3.274666 1.705101 0.2085961 0.05225833 0.051600 0.069975 0.018375 0.83046673 0.03383959 FALSE TRUE
MSTRG.14467.3 ENSG00000142347 No_inf pgKDN_inf MYO1F protein_coding   139.4764 155.4031 125.3046 5.95869 2.790938 -0.3105537 42.136866 33.807633 43.665553 1.142483 2.795212 0.3690503 0.30758333 0.218000 0.349900 0.131900 0.03439744 0.03383959 TRUE TRUE
MSTRG.14467.4 ENSG00000142347 No_inf pgKDN_inf MYO1F protein_coding   139.4764 155.4031 125.3046 5.95869 2.790938 -0.3105537 11.179107 6.461924 14.896885 1.034430 4.464797 1.2037122 0.08330000 0.042250 0.118075 0.075825 0.29726981 0.03383959 FALSE TRUE
MSTRG.14467.6 ENSG00000142347 No_inf pgKDN_inf MYO1F protein_coding   139.4764 155.4031 125.3046 5.95869 2.790938 -0.3105537 12.737151 20.056966 8.485575 1.561900 1.048882 -1.2400390 0.08916667 0.128825 0.068100 -0.060725 0.14544593 0.03383959 FALSE TRUE
MSTRG.14467.7 ENSG00000142347 No_inf pgKDN_inf MYO1F protein_coding   139.4764 155.4031 125.3046 5.95869 2.790938 -0.3105537 34.765756 36.820051 31.351759 3.265247 1.822999 -0.2318769 0.24990833 0.236225 0.251525 0.015300 0.91798900 0.03383959 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000142347 E001 0.4892854 0.0158814054 8.679283e-01   19 8520778 8520796 19 - 0.185 0.162 -0.237
ENSG00000142347 E002 7.9673547 0.0348444280 7.659574e-01 9.090762e-01 19 8520797 8521120 324 - 0.965 0.938 -0.104
ENSG00000142347 E003 4.0896358 0.0034720912 1.503928e-01 4.129772e-01 19 8521121 8521139 19 - 0.594 0.775 0.763
ENSG00000142347 E004 5.0592666 0.0031779342 3.875826e-01 6.733455e-01 19 8521140 8521144 5 - 0.720 0.822 0.407
ENSG00000142347 E005 7.1399603 0.0023543583 6.826583e-01 8.685848e-01 19 8521145 8521146 2 - 0.883 0.926 0.164
ENSG00000142347 E006 385.9682450 0.0008436104 3.557712e-01 6.455362e-01 19 8521147 8521604 458 - 2.574 2.593 0.062
ENSG00000142347 E007 154.4363618 0.0001177089 8.680490e-01 9.547435e-01 19 8522377 8522546 170 - 2.185 2.191 0.019
ENSG00000142347 E008 134.6410960 0.0001690306 9.222507e-02 3.154000e-01 19 8522634 8522809 176 - 2.153 2.110 -0.142
ENSG00000142347 E009 42.9101279 0.0003328257 3.586815e-01 6.481582e-01 19 8522810 8522829 20 - 1.662 1.621 -0.138
ENSG00000142347 E010 0.7506414 0.0359931205 1.445474e-01 4.047729e-01 19 8525226 8525478 253 - 0.102 0.328 2.085
ENSG00000142347 E011 90.9354582 0.0004749845 4.958841e-01 7.569629e-01 19 8525479 8525562 84 - 1.972 1.951 -0.069
ENSG00000142347 E012 132.1426560 0.0001476591 5.594422e-01 8.005013e-01 19 8526453 8526601 149 - 2.112 2.129 0.057
ENSG00000142347 E013 1.1226066 0.1245558034 1.932947e-01 4.731080e-01 19 8526602 8526788 187 - 0.185 0.411 1.571
ENSG00000142347 E014 135.3543874 0.0001431241 5.670727e-01 8.049611e-01 19 8526789 8526925 137 - 2.122 2.139 0.055
ENSG00000142347 E015 71.9753357 0.0039580845 3.132160e-01 6.064074e-01 19 8526926 8526935 10 - 1.883 1.841 -0.143
ENSG00000142347 E016 153.2647621 0.0001617229 5.247094e-02 2.276541e-01 19 8527338 8527483 146 - 2.210 2.164 -0.154
ENSG00000142347 E017 1.2593773 0.0097533961 1.489519e-02 1.046311e-01 19 8529809 8529997 189 - 0.102 0.481 2.933
ENSG00000142347 E018 0.2543986 0.0160470107 3.051865e-01   19 8530040 8530074 35 - 0.000 0.162 9.643
ENSG00000142347 E019 1.1262239 0.0558501677 1.634362e-01 4.322660e-01 19 8530075 8530195 121 - 0.185 0.411 1.571
ENSG00000142347 E020 139.2490623 0.0001275534 5.261036e-02 2.279472e-01 19 8530196 8530365 170 - 2.170 2.122 -0.160
ENSG00000142347 E021 47.8569421 0.0010305715 4.758169e-01 7.424263e-01 19 8530459 8530481 23 - 1.703 1.672 -0.103
ENSG00000142347 E022 67.8981261 0.0052619157 6.974826e-01 8.765501e-01 19 8530482 8530573 92 - 1.844 1.828 -0.054
ENSG00000142347 E023 107.8080038 0.0022138132 2.516386e-01 5.428315e-01 19 8536252 8536396 145 - 2.055 2.016 -0.128
ENSG00000142347 E024 89.8610573 0.0001710435 5.244125e-01 7.775379e-01 19 8536499 8536597 99 - 1.966 1.947 -0.063
ENSG00000142347 E025 2.1189266 0.0108707851 6.205210e-02 2.502219e-01 19 8536598 8536646 49 - 0.314 0.595 1.464
ENSG00000142347 E026 94.8343327 0.0001608089 3.192848e-01 6.119995e-01 19 8536949 8537055 107 - 1.995 1.965 -0.098
ENSG00000142347 E027 71.3302607 0.0001942796 6.907525e-01 8.730183e-01 19 8539947 8540028 82 - 1.863 1.851 -0.043
ENSG00000142347 E028 1.2538033 0.1328380308 1.539540e-01 4.190074e-01 19 8540029 8540052 24 - 0.185 0.448 1.763
ENSG00000142347 E029 2.7367401 0.0051313610 7.772072e-02 2.852916e-01 19 8540319 8540463 145 - 0.414 0.663 1.178
ENSG00000142347 E030 6.2619926 0.0023542364 8.605027e-01 9.516754e-01 19 8541728 8541905 178 - 0.868 0.851 -0.067
ENSG00000142347 E031 33.8116517 0.0004027901 7.186086e-01 8.867152e-01 19 8541906 8541912 7 - 1.527 1.547 0.069
ENSG00000142347 E032 66.5319334 0.0015279742 6.517373e-01 8.533477e-01 19 8541913 8541991 79 - 1.836 1.819 -0.055
ENSG00000142347 E033 1.8689009 0.1152977113 2.039601e-01 4.866350e-01 19 8544068 8544296 229 - 0.314 0.542 1.223
ENSG00000142347 E034 105.9400471 0.0006743229 5.347455e-01 7.846452e-01 19 8544297 8544464 168 - 2.036 2.018 -0.059
ENSG00000142347 E035 1.7233288 0.0209291081 8.296699e-01 9.382722e-01 19 8545443 8545649 207 - 0.414 0.448 0.178
ENSG00000142347 E036 78.6442611 0.0002093855 7.980317e-01 9.239249e-01 19 8545650 8545736 87 - 1.892 1.903 0.035
ENSG00000142347 E037 1.4888121 0.0093329366 3.855423e-01 6.715049e-01 19 8547633 8547695 63 - 0.314 0.448 0.763
ENSG00000142347 E038 0.8435968 0.0125603301 1.748504e-01 4.486668e-01 19 8547854 8548035 182 - 0.367 0.162 -1.559
ENSG00000142347 E039 81.7126541 0.0008893528 7.841471e-01 9.168342e-01 19 8548036 8548122 87 - 1.908 1.919 0.038
ENSG00000142347 E040 73.2730799 0.0002242465 4.901510e-01 7.528230e-01 19 8548237 8548297 61 - 1.880 1.858 -0.077
ENSG00000142347 E041 50.9200081 0.0010360428 5.881778e-01 8.172184e-01 19 8548298 8548317 20 - 1.698 1.723 0.085
ENSG00000142347 E042 0.1170040 0.0117878639 4.546713e-01   19 8549580 8549594 15 - 0.102 0.000 -9.853
ENSG00000142347 E043 5.8779344 0.0044171464 5.707428e-01 8.070697e-01 19 8549595 8549600 6 - 0.868 0.807 -0.237
ENSG00000142347 E044 3.3793435 0.0189801911 4.837501e-03 4.837860e-02 19 8549601 8550159 559 - 0.367 0.775 1.901
ENSG00000142347 E045 32.6548914 0.0013327230 2.136339e-01 4.988151e-01 19 8550160 8550165 6 - 1.484 1.553 0.236
ENSG00000142347 E046 141.1628181 0.0008316235 4.103221e-01 6.921528e-01 19 8550166 8550356 191 - 2.161 2.140 -0.071
ENSG00000142347 E047 1.6410356 0.0080987101 2.720619e-03 3.204074e-02 19 8550357 8550413 57 - 0.102 0.569 3.348
ENSG00000142347 E048 95.5535412 0.0001849322 2.806128e-01 5.739317e-01 19 8550562 8550682 121 - 1.999 1.967 -0.107
ENSG00000142347 E049 38.8276066 0.0038012033 7.076010e-01 8.813176e-01 19 8550683 8550694 12 - 1.585 1.607 0.075
ENSG00000142347 E050 72.0100203 0.0053624335 1.016514e-08 7.232804e-07 19 8550695 8551422 728 - 1.684 1.962 0.939
ENSG00000142347 E051 29.1924493 0.0004602250 2.491880e-06 1.025932e-04 19 8551423 8551665 243 - 1.304 1.577 0.942
ENSG00000142347 E052 13.4791695 0.0010196842 3.739194e-06 1.461374e-04 19 8551666 8551739 74 - 0.898 1.290 1.420
ENSG00000142347 E053 41.2566801 0.0003340584 1.731345e-01 4.462468e-01 19 8551740 8551750 11 - 1.585 1.651 0.224
ENSG00000142347 E054 68.6792887 0.0002104021 3.354476e-01 6.272882e-01 19 8551751 8551829 79 - 1.859 1.825 -0.113
ENSG00000142347 E055 45.8688759 0.0003058633 2.277273e-02 1.374929e-01 19 8551830 8551874 45 - 1.721 1.621 -0.337
ENSG00000142347 E056 14.2083929 0.0067313438 7.807827e-05 1.932571e-03 19 8551875 8552032 158 - 0.953 1.300 1.249
ENSG00000142347 E057 74.9691825 0.0002778414 5.843264e-02 2.420883e-01 19 8552033 8552164 132 - 1.913 1.848 -0.218
ENSG00000142347 E058 67.4651784 0.0017075288 3.926087e-01 6.775986e-01 19 8553139 8553211 73 - 1.851 1.818 -0.111
ENSG00000142347 E059 43.6726198 0.0041924486 5.364833e-01 7.857776e-01 19 8553212 8553221 10 - 1.664 1.633 -0.107
ENSG00000142347 E060 45.6534563 0.0052305205 7.060560e-01 8.806771e-01 19 8553222 8553228 7 - 1.677 1.657 -0.066
ENSG00000142347 E061 1.2608208 0.0170608209 1.565606e-02 1.082279e-01 19 8553229 8553349 121 - 0.102 0.481 2.933
ENSG00000142347 E062 69.3414852 0.0052669596 2.085817e-01 4.926707e-01 19 8553350 8553437 88 - 1.876 1.818 -0.196
ENSG00000142347 E063 64.6132771 0.0008649246 2.931981e-01 5.867653e-01 19 8554477 8554571 95 - 1.836 1.796 -0.133
ENSG00000142347 E064 3.2666537 0.0043906258 1.116151e-03 1.632280e-02 19 8554572 8554653 82 - 0.314 0.775 2.223
ENSG00000142347 E065 54.5218070 0.0010577295 3.182948e-01 6.110743e-01 19 8554654 8554701 48 - 1.716 1.760 0.150
ENSG00000142347 E066 53.0689627 0.0002897827 2.304318e-01 5.189840e-01 19 8554702 8554743 42 - 1.700 1.752 0.174
ENSG00000142347 E067 0.6260196 0.0151485638 2.374683e-01 5.264773e-01 19 8555392 8555628 237 - 0.102 0.279 1.763
ENSG00000142347 E068 0.3709943 0.0167411446 6.925046e-01   19 8555629 8555636 8 - 0.102 0.162 0.763
ENSG00000142347 E069 0.4900408 0.0159284182 8.678182e-01   19 8555637 8555658 22 - 0.185 0.162 -0.237
ENSG00000142347 E070 78.9776798 0.0002115063 8.509792e-01 9.472419e-01 19 8555659 8555796 138 - 1.903 1.898 -0.016
ENSG00000142347 E071 8.2324463 0.0708190762 1.471759e-02 1.037212e-01 19 8576442 8577306 865 - 0.720 1.089 1.407
ENSG00000142347 E072 30.7248949 0.0004354860 8.457274e-01 9.451216e-01 19 8577307 8577577 271 - 1.492 1.504 0.041

Help

Please Click HERE to learn more details about the results from DEXseq.