ENSG00000143093

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000369795 ENSG00000143093 No_inf pgKDN_inf STRIP1 protein_coding protein_coding 25.72403 26.88105 25.28974 1.40861 1.219905 -0.08800321 14.678064 10.064572 17.0565855 0.6501023 1.1127349 0.7604560 0.57865833 0.381275 0.675675 0.294400 0.01358054 0.01358054 FALSE TRUE
ENST00000461054 ENSG00000143093 No_inf pgKDN_inf STRIP1 protein_coding retained_intron 25.72403 26.88105 25.28974 1.40861 1.219905 -0.08800321 3.683594 4.827665 2.9900220 0.3991465 0.4231585 -0.6893378 0.14185000 0.180450 0.116600 -0.063850 0.66663719 0.01358054   FALSE
ENST00000539541 ENSG00000143093 No_inf pgKDN_inf STRIP1 protein_coding retained_intron 25.72403 26.88105 25.28974 1.40861 1.219905 -0.08800321 1.269426 2.649527 0.4155813 0.5086759 0.1385593 -2.6436628 0.04754167 0.096500 0.017075 -0.079425 0.04540971 0.01358054   FALSE
MSTRG.1509.5 ENSG00000143093 No_inf pgKDN_inf STRIP1 protein_coding   25.72403 26.88105 25.28974 1.40861 1.219905 -0.08800321 2.710245 4.860403 1.2668772 0.7859428 0.8155066 -1.9314214 0.10230000 0.177900 0.049800 -0.128100 0.27692380 0.01358054 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000143093 E001 0.0000000       1 110031577 110031640 64 +      
ENSG00000143093 E002 0.4821692 0.0322837391 0.339495762   1 110034624 110034625 2 + 0.236 0.097 -1.533
ENSG00000143093 E003 1.4434305 0.0093077882 0.090196733 0.31198951 1 110034626 110034631 6 + 0.500 0.242 -1.533
ENSG00000143093 E004 10.3166472 0.0036268150 0.021693673 0.13359518 1 110034632 110034817 186 + 1.146 0.941 -0.749
ENSG00000143093 E005 6.4756662 0.0064440564 0.778044446 0.91486644 1 110037891 110037960 70 + 0.888 0.859 -0.112
ENSG00000143093 E006 1.0076504 0.0113407137 0.023481678 0.14005591 1 110037961 110038244 284 + 0.094 0.438 2.859
ENSG00000143093 E007 1.1253461 0.0106349829 0.080728241 0.29201271 1 110038562 110038682 121 + 0.171 0.438 1.859
ENSG00000143093 E008 7.6916457 0.0086233536 0.817347849 0.93360879 1 110038683 110038757 75 + 0.951 0.928 -0.086
ENSG00000143093 E009 0.4984103 0.0359374317 0.308667994   1 110039094 110039171 78 + 0.094 0.242 1.637
ENSG00000143093 E010 9.7159171 0.0014570273 0.062626677 0.25143239 1 110039172 110039306 135 + 1.107 0.941 -0.609
ENSG00000143093 E011 11.7990697 0.0156948332 0.132769893 0.38688267 1 110039395 110039515 121 + 1.175 1.030 -0.521
ENSG00000143093 E012 0.6075454 0.0279828490 0.685211343 0.86988638 1 110039516 110039717 202 + 0.236 0.176 -0.533
ENSG00000143093 E013 0.1268540 0.0123321396 0.520752147   1 110039824 110039937 114 + 0.000 0.097 10.370
ENSG00000143093 E014 8.7549375 0.0766951868 0.375891157 0.66312922 1 110040635 110040703 69 + 1.055 0.915 -0.517
ENSG00000143093 E015 0.2539903 0.0160681789 0.231173707   1 110041171 110041535 365 + 0.000 0.176 11.310
ENSG00000143093 E016 9.0315435 0.0029242137 0.439803810 0.71565879 1 110041536 110041642 107 + 1.036 0.965 -0.262
ENSG00000143093 E017 0.2533610 0.0160675366 0.231148162   1 110041643 110041733 91 + 0.000 0.176 11.310
ENSG00000143093 E018 11.6043045 0.0012260377 0.581282186 0.81339993 1 110041734 110041861 128 + 1.123 1.078 -0.161
ENSG00000143093 E019 2.2230320 0.0098749034 0.318367576 0.61111955 1 110042874 110043087 214 + 0.429 0.573 0.704
ENSG00000143093 E020 19.2156772 0.0008766513 0.028643874 0.15847265 1 110043088 110043270 183 + 1.373 1.229 -0.503
ENSG00000143093 E021 13.5288283 0.0166504392 0.219731746 0.50634531 1 110043639 110043711 73 + 1.215 1.104 -0.394
ENSG00000143093 E022 18.1515856 0.0009213461 0.091560938 0.31419604 1 110043712 110043856 145 + 1.336 1.223 -0.397
ENSG00000143093 E023 13.3662384 0.0009907319 0.641236781 0.84763767 1 110044840 110044905 66 + 1.138 1.175 0.131
ENSG00000143093 E024 18.6413556 0.0007052126 0.483329504 0.74795976 1 110045015 110045078 64 + 1.268 1.316 0.166
ENSG00000143093 E025 3.3734291 0.0043673464 0.002486416 0.02998711 1 110045079 110045497 419 + 0.388 0.795 1.859
ENSG00000143093 E026 19.0426105 0.0006853405 0.359104258 0.64853000 1 110046680 110046751 72 + 1.331 1.272 -0.208
ENSG00000143093 E027 10.8751077 0.0012615052 0.001173995 0.01692549 1 110047542 110047572 31 + 1.195 0.915 -1.021
ENSG00000143093 E028 13.4723745 0.0011171169 0.016501485 0.11186211 1 110047573 110047616 44 + 1.245 1.059 -0.665
ENSG00000143093 E029 21.9806697 0.0159838818 0.467382829 0.73578024 1 110047772 110047869 98 + 1.390 1.331 -0.206
ENSG00000143093 E030 6.9303496 0.0020514965 0.023495040 0.14008197 1 110047870 110048304 435 + 0.764 0.999 0.900
ENSG00000143093 E031 24.6921626 0.0005648370 0.187888165 0.46613154 1 110049112 110049238 127 + 1.368 1.446 0.267
ENSG00000143093 E032 7.0769692 0.0026988875 0.003617686 0.03964585 1 110049239 110049459 221 + 0.727 1.030 1.167
ENSG00000143093 E033 14.7924765 0.0011512199 0.788205104 0.91876062 1 110049460 110049560 101 + 1.208 1.189 -0.068
ENSG00000143093 E034 5.8348344 0.0672263768 0.029686078 0.16202074 1 110049561 110050342 782 + 0.640 0.965 1.289
ENSG00000143093 E035 16.1704015 0.0008901367 0.711848635 0.88348776 1 110050343 110050409 67 + 1.221 1.248 0.095
ENSG00000143093 E036 22.8199521 0.0006046132 0.329015054 0.62147838 1 110050956 110051060 105 + 1.346 1.405 0.207
ENSG00000143093 E037 36.1402684 0.0063561556 0.074475099 0.27828322 1 110051683 110051887 205 + 1.515 1.617 0.347
ENSG00000143093 E038 105.8750908 0.0001640022 0.028018273 0.15638389 1 110053665 110054802 1138 + 1.998 2.056 0.196
ENSG00000143093 E039 0.0000000       1 110072455 110072596 142 +      
ENSG00000143093 E040 0.0000000       1 110074127 110074641 515 +      

Help

Please Click HERE to learn more details about the results from DEXseq.