ENSG00000143207

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000367666 ENSG00000143207 No_inf pgKDN_inf COP1 protein_coding protein_coding 42.3658 38.51748 45.99194 1.628909 1.223664 0.2558067 9.156318 10.8823282 11.382247 1.9007006 2.968049 0.06473994 0.2225750 0.287925 0.250725 -0.037200 0.88086969 0.04011845 FALSE  
ENST00000367669 ENSG00000143207 No_inf pgKDN_inf COP1 protein_coding protein_coding 42.3658 38.51748 45.99194 1.628909 1.223664 0.2558067 5.219877 0.8346679 8.394256 0.8346679 3.264412 3.31466401 0.1150500 0.019550 0.181100 0.161550 0.21688359 0.04011845 FALSE  
ENST00000482305 ENSG00000143207 No_inf pgKDN_inf COP1 protein_coding retained_intron 42.3658 38.51748 45.99194 1.628909 1.223664 0.2558067 2.185252 3.5540197 0.000000 2.2084127 0.000000 -8.47736150 0.0523500 0.087800 0.000000 -0.087800 0.04011845 0.04011845    
MSTRG.2298.2 ENSG00000143207 No_inf pgKDN_inf COP1 protein_coding   42.3658 38.51748 45.99194 1.628909 1.223664 0.2558067 7.144103 8.8804049 6.572005 1.4589672 2.624678 -0.43372208 0.1755667 0.235750 0.143275 -0.092475 0.77196149 0.04011845 FALSE  
MSTRG.2298.3 ENSG00000143207 No_inf pgKDN_inf COP1 protein_coding   42.3658 38.51748 45.99194 1.628909 1.223664 0.2558067 15.144302 12.4281862 14.603024 3.0081868 3.787151 0.23247860 0.3543750 0.322275 0.314825 -0.007450 1.00000000 0.04011845 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000143207 E001 0.0000000       1 175944772 175944798 27 -      
ENSG00000143207 E002 0.2536433 0.0161284373 0.198175562   1 175944799 175944830 32 - 0.000 0.184 12.113
ENSG00000143207 E003 0.3807797 0.0339117082 0.081059647   1 175944831 175944831 1 - 0.000 0.253 12.704
ENSG00000143207 E004 2.9438345 0.0062962115 0.459985635 0.73151732 1 175944832 175944847 16 - 0.544 0.646 0.455
ENSG00000143207 E005 2.9438345 0.0062962115 0.459985635 0.73151732 1 175944848 175944852 5 - 0.544 0.646 0.455
ENSG00000143207 E006 42.9740304 0.0152076127 0.262615495 0.55543517 1 175944853 175945152 300 - 1.605 1.681 0.256
ENSG00000143207 E007 13.6076609 0.0027794047 0.320988363 0.61402549 1 175945153 175945170 18 - 1.123 1.205 0.292
ENSG00000143207 E008 22.8014003 0.0006857472 0.212519977 0.49771508 1 175947195 175947239 45 - 1.336 1.416 0.276
ENSG00000143207 E009 0.5066574 0.2520168360 0.064257019 0.25525229 1 175947240 175947326 87 - 0.000 0.313 13.118
ENSG00000143207 E010 60.2662539 0.0002591354 0.111079285 0.34989780 1 175986943 175987103 161 - 1.755 1.819 0.214
ENSG00000143207 E011 51.0788633 0.0010368925 0.146406124 0.40741043 1 175988288 175988412 125 - 1.684 1.749 0.221
ENSG00000143207 E012 1.9941177 0.0077342059 0.022094978 0.13507718 1 175988413 175989361 949 - 0.281 0.619 1.799
ENSG00000143207 E013 42.4531133 0.0003915216 0.521189620 0.77530531 1 175989362 175989479 118 - 1.650 1.625 -0.085
ENSG00000143207 E014 34.1418571 0.0004330286 0.450362386 0.72373947 1 176027572 176027688 117 - 1.525 1.567 0.142
ENSG00000143207 E015 18.5829111 0.0007550259 0.016241700 0.11072934 1 176043186 176043203 18 - 1.204 1.369 0.579
ENSG00000143207 E016 18.7162976 0.0009676409 0.008456542 0.07181606 1 176043204 176043215 12 - 1.198 1.379 0.635
ENSG00000143207 E017 29.1640156 0.0065407925 0.295561111 0.58869829 1 176043216 176043267 52 - 1.444 1.514 0.239
ENSG00000143207 E018 34.4945343 0.0004224965 0.297694056 0.59080498 1 176043710 176043809 100 - 1.572 1.524 -0.165
ENSG00000143207 E019 10.6251905 0.0016484084 0.002721449 0.03204074 1 176043810 176043818 9 - 1.172 0.909 -0.961
ENSG00000143207 E020 35.3541534 0.0004045007 0.010659068 0.08375381 1 176046181 176046324 144 - 1.615 1.492 -0.420
ENSG00000143207 E021 32.1681243 0.0005424031 0.222330114 0.50963750 1 176081152 176081287 136 - 1.548 1.488 -0.204
ENSG00000143207 E022 23.5581352 0.0010166686 0.586003245 0.81629989 1 176085776 176085865 90 - 1.403 1.374 -0.101
ENSG00000143207 E023 16.6403104 0.0117235369 0.811724856 0.93070772 1 176085866 176085890 25 - 1.234 1.259 0.087
ENSG00000143207 E024 0.2539903 0.0160787711 0.198327455   1 176100245 176100272 28 - 0.000 0.184 12.119
ENSG00000143207 E025 18.1346748 0.0016630796 0.403086302 0.68610921 1 176116624 176116645 22 - 1.251 1.312 0.214
ENSG00000143207 E026 21.6670217 0.0058491248 0.614056280 0.83220704 1 176116646 176116681 36 - 1.336 1.374 0.133
ENSG00000143207 E027 0.3639133 0.2173281465 0.725525931   1 176133847 176133900 54 - 0.163 0.102 -0.787
ENSG00000143207 E028 23.5903818 0.0006474420 0.859255663 0.95099633 1 176135010 176135086 77 - 1.383 1.398 0.050
ENSG00000143207 E029 15.5880087 0.0039802442 0.442376916 0.71774114 1 176136488 176136547 60 - 1.245 1.190 -0.194
ENSG00000143207 E030 20.6032595 0.0007934845 0.478567005 0.74449891 1 176149006 176149074 69 - 1.354 1.312 -0.146
ENSG00000143207 E031 22.1093913 0.0006528481 0.041118344 0.19677700 1 176162869 176162988 120 - 1.419 1.295 -0.430
ENSG00000143207 E032 6.5383557 0.0057381922 0.103331902 0.33601840 1 176163815 176163826 12 - 0.952 0.779 -0.667
ENSG00000143207 E033 12.7868887 0.0013417476 0.347249782 0.63784011 1 176163827 176163891 65 - 1.172 1.100 -0.257
ENSG00000143207 E034 0.1272623 0.0123326501 0.467996625   1 176168665 176168748 84 - 0.000 0.102 11.119
ENSG00000143207 E035 16.0701523 0.0009615662 0.264922197 0.55794110 1 176175910 176176007 98 - 1.267 1.190 -0.271
ENSG00000143207 E036 15.0514029 0.0046664872 0.066430437 0.25961291 1 176184633 176184692 60 - 1.267 1.127 -0.498
ENSG00000143207 E037 0.0000000       1 176201261 176201345 85 -      
ENSG00000143207 E038 0.0000000       1 176206349 176206571 223 -      
ENSG00000143207 E039 42.9442214 0.0014704122 0.045439773 0.20848564 1 176206572 176207306 735 - 1.684 1.594 -0.306

Help

Please Click HERE to learn more details about the results from DEXseq.