ENSG00000143702

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000366542 ENSG00000143702 No_inf pgKDN_inf CEP170 protein_coding protein_coding 63.60384 51.91491 71.93301 5.342785 3.110012 0.4704275 8.867521 2.077137 13.8556621 2.0771367 0.9496642 2.7319195 0.13565833 0.043225 0.192900 0.149675 0.02165118 0.02165118 FALSE TRUE
ENST00000468254 ENSG00000143702 No_inf pgKDN_inf CEP170 protein_coding protein_coding_CDS_not_defined 63.60384 51.91491 71.93301 5.342785 3.110012 0.4704275 24.239703 23.373300 28.8950270 0.5859545 0.4967646 0.3058419 0.39494167 0.465250 0.404650 -0.060600 0.82448846 0.02165118 FALSE TRUE
ENST00000476661 ENSG00000143702 No_inf pgKDN_inf CEP170 protein_coding protein_coding_CDS_not_defined 63.60384 51.91491 71.93301 5.342785 3.110012 0.4704275 9.215047 5.584945 7.0166754 4.4442352 3.1165447 0.3287183 0.12755000 0.087875 0.093400 0.005525 0.83691150 0.02165118   FALSE
MSTRG.2997.5 ENSG00000143702 No_inf pgKDN_inf CEP170 protein_coding   63.60384 51.91491 71.93301 5.342785 3.110012 0.4704275 3.709230 4.982214 0.9944921 1.8538720 0.9944921 -2.3132136 0.06154167 0.100950 0.012700 -0.088250 0.25702544 0.02165118 FALSE TRUE
MSTRG.2997.6 ENSG00000143702 No_inf pgKDN_inf CEP170 protein_coding   63.60384 51.91491 71.93301 5.342785 3.110012 0.4704275 7.063643 4.810086 9.1067065 0.8199304 1.3169560 0.9194539 0.11258333 0.093250 0.129325 0.036075 0.82402080 0.02165118 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000143702 E001 1.5974450 0.0941111736 0.485406997 0.74924207 1 243124428 243124428 1 - 0.355 0.476 0.660
ENSG00000143702 E002 76.1297720 0.0002741563 0.014956288 0.10482813 1 243124429 243124892 464 - 1.846 1.928 0.276
ENSG00000143702 E003 61.9373951 0.0007750678 0.081561759 0.29361580 1 243124893 243125163 271 - 1.765 1.832 0.227
ENSG00000143702 E004 109.0986350 0.0001940945 0.338916974 0.63055789 1 243125164 243125917 754 - 2.050 2.025 -0.085
ENSG00000143702 E005 0.0000000       1 243125918 243125921 4 -      
ENSG00000143702 E006 25.9203083 0.0005636306 0.074101261 0.27734750 1 243125922 243126134 213 - 1.379 1.482 0.357
ENSG00000143702 E007 44.0790759 0.0038120914 0.232668708 0.52130459 1 243126135 243126344 210 - 1.623 1.684 0.206
ENSG00000143702 E008 23.6132044 0.0005884188 0.082885002 0.29667638 1 243126345 243126377 33 - 1.339 1.444 0.363
ENSG00000143702 E009 20.5780535 0.0006724598 0.894584495 0.96514413 1 243126378 243126408 31 - 1.335 1.327 -0.027
ENSG00000143702 E010 23.6902874 0.0005895594 0.343911519 0.63531267 1 243126409 243126494 86 - 1.363 1.421 0.200
ENSG00000143702 E011 9.4352079 0.0014959856 0.154422547 0.41983272 1 243126495 243126612 118 - 0.954 1.083 0.476
ENSG00000143702 E012 4.7000366 0.0036221820 0.067950472 0.26305202 1 243126613 243126683 71 - 0.838 0.616 -0.910
ENSG00000143702 E013 12.8128489 0.0012704271 0.046901478 0.21273100 1 243126684 243126738 55 - 1.202 1.040 -0.582
ENSG00000143702 E014 34.7913245 0.0004041758 0.664984183 0.86070800 1 243128249 243128300 52 - 1.560 1.539 -0.071
ENSG00000143702 E015 0.3809703 0.0376257028 0.059079110   1 243128301 243128855 555 - 0.000 0.268 12.551
ENSG00000143702 E016 27.1571896 0.0005275748 0.979156117 0.99739001 1 243129360 243129372 13 - 1.446 1.448 0.008
ENSG00000143702 E017 25.6963195 0.0005496948 0.967078188 0.99337266 1 243129373 243129453 81 - 1.422 1.426 0.011
ENSG00000143702 E018 0.7253395 0.0139416535 0.648428206 0.85157363 1 243135752 243136142 391 - 0.265 0.196 -0.562
ENSG00000143702 E019 0.0000000       1 243136143 243136231 89 -      
ENSG00000143702 E020 0.0000000       1 243136232 243136304 73 -      
ENSG00000143702 E021 0.0000000       1 243139937 243139983 47 -      
ENSG00000143702 E022 0.0000000       1 243139984 243140107 124 -      
ENSG00000143702 E023 0.0000000       1 243140108 243140363 256 -      
ENSG00000143702 E024 0.1265070 0.0123074110 0.395663717   1 243142286 243142315 30 - 0.000 0.109 11.185
ENSG00000143702 E025 0.0000000       1 243142316 243142366 51 -      
ENSG00000143702 E026 0.0000000       1 243142367 243142463 97 -      
ENSG00000143702 E027 8.4557247 0.0602604643 0.456867724 0.72899334 1 243156221 243156347 127 - 0.922 1.029 0.396
ENSG00000143702 E028 17.4252562 0.0021580831 0.027387271 0.15407375 1 243156348 243156455 108 - 1.326 1.167 -0.562
ENSG00000143702 E029 2.9933678 0.0067594260 0.001496985 0.02045045 1 243156456 243156821 366 - 0.354 0.787 2.023
ENSG00000143702 E030 0.9897445 0.1527725057 0.369113591 0.65744387 1 243163158 243163272 115 - 0.212 0.385 1.175
ENSG00000143702 E031 0.8630165 0.0518783703 0.462837971 0.73298987 1 243163273 243163340 68 - 0.212 0.330 0.853
ENSG00000143702 E032 26.8458529 0.0006509011 0.341308532 0.63288865 1 243164284 243164918 635 - 1.465 1.411 -0.185
ENSG00000143702 E033 59.7253046 0.0002832147 0.412340927 0.69363534 1 243164919 243165988 1070 - 1.794 1.763 -0.103
ENSG00000143702 E034 0.1187032 0.0118558976 0.726765033   1 243165989 243166116 128 - 0.083 0.000 -11.454
ENSG00000143702 E035 0.0000000       1 243166527 243166572 46 -      
ENSG00000143702 E036 0.0000000       1 243169440 243169627 188 -      
ENSG00000143702 E037 3.4136073 0.0042018120 0.971483838 0.99453344 1 243169628 243169693 66 - 0.640 0.645 0.023
ENSG00000143702 E038 7.8750100 0.0045398522 0.163946958 0.43306471 1 243169694 243169754 61 - 1.002 0.861 -0.529
ENSG00000143702 E039 13.1425477 0.0012566803 0.004883894 0.04875764 1 243172697 243172810 114 - 1.235 1.005 -0.829
ENSG00000143702 E040 8.5960161 0.0075619062 0.234111957 0.52315120 1 243172811 243172846 36 - 1.028 0.910 -0.441
ENSG00000143702 E041 0.0000000       1 243175023 243175188 166 -      
ENSG00000143702 E042 0.0000000       1 243176702 243176816 115 -      
ENSG00000143702 E043 15.3986373 0.0010212548 0.209270192 0.49353021 1 243185779 243186072 294 - 1.251 1.158 -0.329
ENSG00000143702 E044 3.1384960 0.0051279204 0.224120831 0.51171505 1 243186073 243186258 186 - 0.680 0.516 -0.732
ENSG00000143702 E045 17.3481221 0.0009322013 0.264159782 0.55724933 1 243186259 243186422 164 - 1.225 1.303 0.275
ENSG00000143702 E046 0.1186381 0.0119446377 0.726671272   1 243186423 243186499 77 - 0.083 0.000 -11.453
ENSG00000143702 E047 20.5798414 0.0007012675 0.981565472 0.99821803 1 243191018 243191494 477 - 1.330 1.333 0.008
ENSG00000143702 E048 7.3326088 0.0783635771 0.693796901 0.87489497 1 243199060 243199194 135 - 0.888 0.953 0.245
ENSG00000143702 E049 1.8428479 0.0074209682 0.406025968 0.68870034 1 243200518 243200613 96 - 0.393 0.516 0.631
ENSG00000143702 E050 0.0000000       1 243200614 243200680 67 -      
ENSG00000143702 E051 0.0000000       1 243200777 243200835 59 -      
ENSG00000143702 E052 1.9747069 0.0240173287 0.123763930 0.37255385 1 243211213 243211885 673 - 0.354 0.585 1.175
ENSG00000143702 E053 0.9630255 0.0121756715 0.306447201 0.59966343 1 243211886 243211894 9 - 0.354 0.196 -1.147
ENSG00000143702 E054 7.7327377 0.0018385970 0.066194664 0.25906270 1 243211895 243211964 70 - 1.011 0.826 -0.699
ENSG00000143702 E055 0.0000000       1 243221555 243221723 169 -      
ENSG00000143702 E056 14.1792757 0.0010378482 0.146621408 0.40767396 1 243221724 243221813 90 - 1.225 1.113 -0.398
ENSG00000143702 E057 11.8482449 0.0329974343 0.198419981 0.47982951 1 243225176 243225321 146 - 1.166 1.017 -0.539
ENSG00000143702 E058 0.3611417 0.0166225124 0.787698409   1 243253102 243253320 219 - 0.152 0.109 -0.562
ENSG00000143702 E059 0.5985480 0.0150154653 0.299394786 0.59230989 1 243254351 243254470 120 - 0.265 0.109 -1.562
ENSG00000143702 E060 2.5110621 0.0822566811 0.058988696 0.24366212 1 243255040 243255046 7 - 0.660 0.330 -1.649
ENSG00000143702 E061 13.7435112 0.0010945870 0.699751262 0.87760833 1 243255047 243255428 382 - 1.179 1.149 -0.104

Help

Please Click HERE to learn more details about the results from DEXseq.