ENSG00000147140

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000276079 ENSG00000147140 No_inf pgKDN_inf NONO protein_coding protein_coding 165.5095 148.0393 183.2799 6.179283 2.74151 0.3080496 104.20692 101.253983 121.017000 3.0415415 4.917791 0.2572078 0.63110833 0.68585 0.660300 -0.025550 8.479294e-01 2.041765e-13 FALSE TRUE
ENST00000373841 ENSG00000147140 No_inf pgKDN_inf NONO protein_coding protein_coding 165.5095 148.0393 183.2799 6.179283 2.74151 0.3080496 11.59711 8.357674 13.308880 1.9582201 4.262948 0.6705743 0.06960833 0.05765 0.072075 0.014425 9.817127e-01 2.041765e-13 FALSE TRUE
ENST00000454976 ENSG00000147140 No_inf pgKDN_inf NONO protein_coding protein_coding 165.5095 148.0393 183.2799 6.179283 2.74151 0.3080496 14.10506 0.000000 17.720259 0.0000000 4.919211 10.7919979 0.08191667 0.00000 0.097175 0.097175 2.041765e-13 2.041765e-13 FALSE TRUE
ENST00000473525 ENSG00000147140 No_inf pgKDN_inf NONO protein_coding retained_intron 165.5095 148.0393 183.2799 6.179283 2.74151 0.3080496 10.11803 13.327736 7.895797 0.9664588 0.945844 -0.7545311 0.06290833 0.09025 0.043300 -0.046950 1.291818e-01 2.041765e-13 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000147140 E001 0.0000000       X 71254814 71255000 187 +      
ENSG00000147140 E002 0.2542726 2.671897e-01 2.769561e-01   X 71266029 71266727 699 + 0.000 0.178 11.195
ENSG00000147140 E003 0.3549719 1.630368e-02 1.165314e-01   X 71283192 71283589 398 + 0.233 0.000 -15.087
ENSG00000147140 E004 0.2362687 1.599885e-02 2.660915e-01   X 71283590 71283609 20 + 0.168 0.000 -14.520
ENSG00000147140 E005 0.2363338 1.600025e-02 2.661102e-01   X 71283610 71283612 3 + 0.168 0.000 -14.520
ENSG00000147140 E006 0.2363338 1.600025e-02 2.661102e-01   X 71283613 71283614 2 + 0.168 0.000 -14.520
ENSG00000147140 E007 1.1914864 1.131761e-02 9.960241e-03 8.002318e-02 X 71283615 71283624 10 + 0.495 0.098 -3.066
ENSG00000147140 E008 1.6909692 8.710775e-03 1.372231e-01 3.943199e-01 X 71283625 71283632 8 + 0.526 0.304 -1.218
ENSG00000147140 E009 1.6909692 8.710775e-03 1.372231e-01 3.943199e-01 X 71283633 71283634 2 + 0.526 0.304 -1.218
ENSG00000147140 E010 2.0632506 2.533804e-02 3.020606e-01 5.952456e-01 X 71283635 71283640 6 + 0.556 0.402 -0.770
ENSG00000147140 E011 2.5539831 2.294736e-02 3.708164e-01 6.590091e-01 X 71283641 71283643 3 + 0.610 0.481 -0.596
ENSG00000147140 E012 3.5506500 1.818391e-02 9.918037e-01 1.000000e+00 X 71283644 71283647 4 + 0.657 0.658 0.005
ENSG00000147140 E013 4.8020323 1.212901e-02 3.402590e-01 6.319016e-01 X 71283648 71283649 2 + 0.700 0.818 0.476
ENSG00000147140 E014 5.6620572 5.045243e-03 2.789065e-01 5.721338e-01 X 71283650 71283651 2 + 0.757 0.881 0.483
ENSG00000147140 E015 6.1628944 1.909791e-02 2.223309e-01 5.096375e-01 X 71283652 71283653 2 + 0.775 0.922 0.570
ENSG00000147140 E016 10.1749200 1.616750e-02 7.302942e-01 8.926793e-01 X 71283654 71283662 9 + 1.029 1.067 0.139
ENSG00000147140 E017 23.3158726 8.987253e-03 3.856346e-01 6.715743e-01 X 71283663 71283671 9 + 1.352 1.417 0.226
ENSG00000147140 E018 28.3458705 1.626080e-02 4.431136e-01 7.182254e-01 X 71283672 71283675 4 + 1.435 1.498 0.217
ENSG00000147140 E019 40.9301894 1.361181e-02 6.349234e-01 8.440054e-01 X 71283676 71283693 18 + 1.604 1.640 0.122
ENSG00000147140 E020 53.4090252 4.649552e-03 5.627941e-01 8.024782e-01 X 71283694 71283721 28 + 1.720 1.751 0.104
ENSG00000147140 E021 0.3798680 2.791925e-02 9.241067e-02   X 71283722 71283725 4 + 0.000 0.246 14.280
ENSG00000147140 E022 0.3798680 2.791925e-02 9.241067e-02   X 71283726 71283735 10 + 0.000 0.246 14.280
ENSG00000147140 E023 0.3802150 2.781637e-02 9.240291e-02   X 71283761 71283988 228 + 0.000 0.246 14.282
ENSG00000147140 E024 0.0000000       X 71284194 71284231 38 +      
ENSG00000147140 E025 47.5365490 4.794673e-03 5.208503e-01 7.749818e-01 X 71284397 71284401 5 + 1.668 1.703 0.119
ENSG00000147140 E026 49.4627477 1.763233e-03 7.293611e-01 8.921048e-01 X 71284402 71284406 5 + 1.694 1.712 0.062
ENSG00000147140 E027 62.1343314 1.611972e-03 9.011103e-01 9.680599e-01 X 71284407 71284453 47 + 1.802 1.799 -0.009
ENSG00000147140 E028 3.6880858 2.417687e-02 3.967405e-01 6.813315e-01 X 71284984 71285097 114 + 0.609 0.725 0.492
ENSG00000147140 E029 1.4881271 2.478134e-02 2.165781e-01 5.027080e-01 X 71285365 71286213 849 + 0.289 0.482 1.105
ENSG00000147140 E030 0.0000000       X 71288427 71288534 108 +      
ENSG00000147140 E031 31.8605389 4.497624e-04 3.810657e-01 6.675213e-01 X 71290629 71290643 15 + 1.538 1.494 -0.150
ENSG00000147140 E032 120.4731234 1.297702e-04 3.893826e-01 6.750594e-01 X 71290644 71290791 148 + 2.071 2.097 0.087
ENSG00000147140 E033 0.2458395 1.617931e-02 9.585500e-01   X 71290792 71290795 4 + 0.092 0.098 0.104
ENSG00000147140 E034 0.2458395 1.617931e-02 9.585500e-01   X 71290796 71290806 11 + 0.092 0.098 0.104
ENSG00000147140 E035 7.9862713 1.750130e-03 1.699599e-05 5.373163e-04 X 71290807 71291778 972 + 0.679 1.120 1.689
ENSG00000147140 E036 47.0519517 3.109748e-04 2.909823e-01 5.845223e-01 X 71291779 71291784 6 + 1.657 1.705 0.165
ENSG00000147140 E037 52.5057984 2.764729e-04 6.538840e-01 8.546573e-01 X 71291785 71291868 84 + 1.718 1.739 0.071
ENSG00000147140 E038 62.0816848 3.012561e-04 5.610372e-03 5.384160e-02 X 71291869 71291972 104 + 1.849 1.745 -0.352
ENSG00000147140 E039 3.5970462 4.224546e-03 6.629368e-02 2.592809e-01 X 71291995 71293041 1047 + 0.526 0.765 1.030
ENSG00000147140 E040 3.2106022 8.988015e-03 1.885432e-01 4.669555e-01 X 71294018 71294218 201 + 0.526 0.704 0.783
ENSG00000147140 E041 0.3617709 1.670970e-02 6.262612e-01   X 71294219 71294226 8 + 0.168 0.098 -0.895
ENSG00000147140 E042 145.1775536 2.468944e-04 3.344513e-02 1.739637e-01 X 71294227 71294348 122 + 2.190 2.138 -0.173
ENSG00000147140 E043 71.9741487 3.644044e-03 8.180161e-01 9.337724e-01 X 71294349 71294397 49 + 1.867 1.859 -0.028
ENSG00000147140 E044 128.6192334 1.336211e-04 1.959637e-01 4.764506e-01 X 71294398 71294528 131 + 2.128 2.096 -0.107
ENSG00000147140 E045 0.3802150 2.781637e-02 9.240291e-02   X 71294529 71295154 626 + 0.000 0.246 14.282
ENSG00000147140 E046 119.8587199 2.226012e-03 1.317017e-01 3.850182e-01 X 71296565 71296660 96 + 2.106 2.058 -0.161
ENSG00000147140 E047 0.4906064 1.770242e-02 9.470630e-01   X 71296661 71296850 190 + 0.168 0.178 0.104
ENSG00000147140 E048 200.6434861 9.574447e-05 9.860245e-02 3.276058e-01 X 71296851 71297047 197 + 2.321 2.288 -0.108
ENSG00000147140 E049 0.7544457 3.392518e-01 2.086932e-01 4.927399e-01 X 71297048 71297360 313 + 0.092 0.356 2.427
ENSG00000147140 E050 0.1186381 1.173201e-02 5.749247e-01   X 71297361 71297376 16 + 0.092 0.000 -13.615
ENSG00000147140 E051 171.1510955 1.179086e-04 2.563877e-01 5.484834e-01 X 71297377 71297461 85 + 2.248 2.224 -0.079
ENSG00000147140 E052 4.8419136 4.595500e-03 9.719479e-03 7.887471e-02 X 71297462 71297587 126 + 0.584 0.895 1.274
ENSG00000147140 E053 3.4425357 2.778113e-02 6.156049e-01 8.331752e-01 X 71297588 71297677 90 + 0.610 0.682 0.311
ENSG00000147140 E054 4.2182196 3.442917e-03 2.494605e-02 1.451942e-01 X 71297678 71297835 158 + 0.556 0.835 1.169
ENSG00000147140 E055 94.6671399 1.623024e-04 3.306466e-01 6.231383e-01 X 71297836 71297839 4 + 1.994 1.967 -0.093
ENSG00000147140 E056 91.6886590 1.649143e-04 7.448671e-01 8.989720e-01 X 71297840 71297842 3 + 1.971 1.963 -0.026
ENSG00000147140 E057 203.6483105 1.140294e-04 5.474236e-01 7.928873e-01 X 71297843 71297938 96 + 2.316 2.306 -0.034
ENSG00000147140 E058 46.8219502 3.134673e-04 3.745402e-16 7.063094e-14 X 71297939 71298468 530 + 1.453 1.828 1.274
ENSG00000147140 E059 108.2702615 3.189186e-04 5.437157e-01 7.905390e-01 X 71298469 71298477 9 + 2.046 2.031 -0.052
ENSG00000147140 E060 133.0195297 2.174223e-04 2.710072e-01 5.646870e-01 X 71298478 71298508 31 + 2.140 2.114 -0.089
ENSG00000147140 E061 1.9685037 7.063942e-03 5.319332e-01 7.823639e-01 X 71298509 71298706 198 + 0.424 0.516 0.467
ENSG00000147140 E062 138.3211932 1.270702e-04 4.009797e-01 6.842078e-01 X 71298707 71298816 110 + 2.154 2.134 -0.064
ENSG00000147140 E063 5.7012788 2.453355e-03 1.000717e-02 8.035234e-02 X 71298817 71299660 844 + 0.657 0.948 1.152
ENSG00000147140 E064 0.3809703 2.776004e-02 9.253050e-02   X 71299661 71299758 98 + 0.000 0.246 14.282
ENSG00000147140 E065 1.7132567 2.512455e-01 8.873317e-01 9.622979e-01 X 71299759 71299941 183 + 0.424 0.443 0.104
ENSG00000147140 E066 437.1368340 6.316461e-05 6.301469e-01 8.413867e-01 X 71299942 71300518 577 + 2.644 2.639 -0.014
ENSG00000147140 E067 596.4007740 1.255429e-03 2.066095e-01 4.902453e-01 X 71300519 71301522 1004 + 2.764 2.788 0.079

Help

Please Click HERE to learn more details about the results from DEXseq.