ENSG00000147162

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000373719 ENSG00000147162 No_inf pgKDN_inf OGT protein_coding protein_coding 84.59739 152.393 43.17776 9.068419 0.5448174 -1.819197 11.987996 6.504631 15.106700 3.7557042 3.2304209 1.214388 0.21502500 0.045950 0.348600 0.302650 8.353707e-02 1.836978e-35 FALSE TRUE
ENST00000459760 ENSG00000147162 No_inf pgKDN_inf OGT protein_coding protein_coding_CDS_not_defined 84.59739 152.393 43.17776 9.068419 0.5448174 -1.819197 24.206970 63.560838 0.000000 9.0345364 0.0000000 -12.634149 0.18182500 0.410275 0.000000 -0.410275 1.836978e-35 1.836978e-35 FALSE FALSE
ENST00000699751 ENSG00000147162 No_inf pgKDN_inf OGT protein_coding retained_intron 84.59739 152.393 43.17776 9.068419 0.5448174 -1.819197 17.329314 32.514023 6.862673 0.5742784 0.5329697 -2.242562 0.19621667 0.215275 0.159375 -0.055900 5.458661e-01 1.836978e-35 FALSE TRUE
ENST00000699779 ENSG00000147162 No_inf pgKDN_inf OGT protein_coding nonsense_mediated_decay 84.59739 152.393 43.17776 9.068419 0.5448174 -1.819197 2.108940 0.000000 2.988755 0.0000000 2.1580564 8.228220 0.04605833 0.000000 0.070250 0.070250 2.494523e-01 1.836978e-35 FALSE TRUE
MSTRG.30121.1 ENSG00000147162 No_inf pgKDN_inf OGT protein_coding   84.59739 152.393 43.17776 9.068419 0.5448174 -1.819197 5.142287 11.759451 2.320001 4.6258517 2.3200010 -2.336645 0.05274167 0.082450 0.054900 -0.027550 5.686211e-01 1.836978e-35 FALSE TRUE
MSTRG.30121.2 ENSG00000147162 No_inf pgKDN_inf OGT protein_coding   84.59739 152.393 43.17776 9.068419 0.5448174 -1.819197 13.633019 22.700058 10.113089 3.6505889 3.0789748 -1.165682 0.16785000 0.146925 0.231975 0.085050 7.942843e-01 1.836978e-35 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000147162 E001 0.1268540 1.231198e-02 1.000000e+00   X 71533070 71533085 16 + 0.000 0.063 8.808
ENSG00000147162 E002 0.3728195 1.651671e-02 8.523316e-01   X 71533086 71533086 1 + 0.141 0.118 -0.288
ENSG00000147162 E003 0.7444404 1.401606e-02 8.209486e-01 9.350145e-01 X 71533087 71533094 8 + 0.247 0.211 -0.288
ENSG00000147162 E004 1.4874962 1.917528e-02 7.516187e-01 9.021833e-01 X 71533095 71533100 6 + 0.403 0.353 -0.288
ENSG00000147162 E005 1.7412041 1.184774e-01 9.861249e-01 9.991944e-01 X 71533101 71533103 3 + 0.403 0.409 0.033
ENSG00000147162 E006 1.7412041 1.184774e-01 9.861249e-01 9.991944e-01 X 71533104 71533105 2 + 0.403 0.409 0.033
ENSG00000147162 E007 1.8598422 9.779302e-03 7.211110e-01 8.876706e-01 X 71533106 71533107 2 + 0.464 0.409 -0.288
ENSG00000147162 E008 1.9869786 4.640996e-02 8.443078e-01 9.444354e-01 X 71533108 71533108 1 + 0.464 0.435 -0.151
ENSG00000147162 E009 2.1141149 3.090107e-02 9.678851e-01 9.935085e-01 X 71533109 71533114 6 + 0.464 0.459 -0.025
ENSG00000147162 E010 2.6044999 3.433571e-02 6.822446e-01 8.684958e-01 X 71533115 71533122 8 + 0.566 0.504 -0.288
ENSG00000147162 E011 3.2400252 3.052033e-02 8.329932e-01 9.397663e-01 X 71533123 71533127 5 + 0.566 0.599 0.152
ENSG00000147162 E012 21.7029050 6.616350e-04 2.437024e-01 5.337324e-01 X 71533128 71533299 172 + 1.365 1.286 -0.276
ENSG00000147162 E013 15.2355037 9.562190e-04 2.253187e-01 5.130817e-01 X 71533300 71533336 37 + 1.232 1.136 -0.341
ENSG00000147162 E014 0.1187032 1.181103e-02 1.992486e-01   X 71534301 71534373 73 + 0.141 0.000 -13.212
ENSG00000147162 E015 16.0605083 8.423317e-04 3.606097e-02 1.822957e-01 X 71536178 71536207 30 + 1.295 1.136 -0.563
ENSG00000147162 E016 35.7269599 4.310172e-04 5.590433e-03 5.373631e-02 X 71536208 71536358 151 + 1.619 1.472 -0.500
ENSG00000147162 E017 1.1420263 1.037712e-02 3.123155e-02 1.667329e-01 X 71536359 71536657 299 + 0.000 0.382 14.047
ENSG00000147162 E018 0.1272623 1.230713e-02 1.000000e+00   X 71537014 71537110 97 + 0.000 0.063 10.912
ENSG00000147162 E019 50.4748372 2.213499e-03 4.966997e-03 4.936901e-02 X 71537829 71538072 244 + 1.758 1.622 -0.460
ENSG00000147162 E020 20.7299781 2.498308e-03 6.435198e-03 5.938146e-02 X 71544567 71544635 69 + 1.419 1.230 -0.660
ENSG00000147162 E021 67.4362715 2.212329e-04 6.578161e-02 2.583648e-01 X 71544636 71545037 402 + 1.731 1.807 0.258
ENSG00000147162 E022 195.1831510 5.073498e-04 3.349654e-02 1.741284e-01 X 71545038 71546210 1173 + 2.204 2.258 0.180
ENSG00000147162 E023 38.3661634 3.770753e-03 4.586441e-01 7.304664e-01 X 71546211 71546343 133 + 1.515 1.559 0.151
ENSG00000147162 E024 39.2974373 3.524079e-04 9.819711e-01 9.984471e-01 X 71546344 71546489 146 + 1.559 1.557 -0.004
ENSG00000147162 E025 16.8453494 7.973344e-04 2.337533e-01 5.227044e-01 X 71546490 71546496 7 + 1.134 1.230 0.340
ENSG00000147162 E026 63.5280204 2.393385e-04 1.011398e-02 8.086146e-02 X 71546497 71546825 329 + 1.678 1.790 0.377
ENSG00000147162 E027 255.2453705 7.305372e-05 3.211962e-12 3.928208e-10 X 71546826 71547906 1081 + 2.246 2.397 0.503
ENSG00000147162 E028 61.7047860 2.373162e-04 6.118934e-01 8.311137e-01 X 71547907 71548023 117 + 1.734 1.755 0.073
ENSG00000147162 E029 0.1272623 1.230713e-02 1.000000e+00   X 71553621 71553645 25 + 0.000 0.063 10.912
ENSG00000147162 E030 47.5993208 3.421650e-04 2.129472e-01 4.981390e-01 X 71554513 71554592 80 + 1.594 1.655 0.208
ENSG00000147162 E031 66.2804142 3.607304e-03 1.773993e-02 1.172100e-01 X 71555190 71555385 196 + 1.692 1.809 0.396
ENSG00000147162 E032 0.6342667 1.424520e-02 1.641948e-01 4.334011e-01 X 71555813 71555953 141 + 0.000 0.251 13.175
ENSG00000147162 E033 92.2980334 2.950201e-03 1.617592e-01 4.300440e-01 X 71555954 71556094 141 + 1.878 1.937 0.197
ENSG00000147162 E034 0.3810317 2.989982e-02 4.307966e-01   X 71556456 71556679 224 + 0.000 0.167 12.287
ENSG00000147162 E035 69.5012226 4.898119e-03 9.677506e-01 9.934949e-01 X 71556680 71556780 101 + 1.802 1.800 -0.007
ENSG00000147162 E036 89.6628800 2.345987e-03 6.576659e-02 2.583248e-01 X 71556952 71557105 154 + 1.960 1.888 -0.243
ENSG00000147162 E037 64.5779754 2.489237e-03 4.991302e-01 7.593930e-01 X 71557195 71557296 102 + 1.791 1.760 -0.105
ENSG00000147162 E038 82.5681455 2.095497e-04 2.425175e-01 5.321591e-01 X 71557493 71557672 180 + 1.904 1.862 -0.142
ENSG00000147162 E039 74.8495010 2.078043e-04 2.546525e-01 5.463830e-01 X 71559267 71559425 159 + 1.863 1.820 -0.146
ENSG00000147162 E040 55.0166851 8.720106e-04 5.105931e-01 7.680560e-01 X 71559588 71559677 90 + 1.678 1.709 0.103
ENSG00000147162 E041 59.0429398 2.274342e-03 3.188124e-01 6.114230e-01 X 71561775 71561900 126 + 1.695 1.743 0.162
ENSG00000147162 E042 89.7704147 2.397669e-04 9.205175e-01 9.752146e-01 X 71562847 71563017 171 + 1.912 1.909 -0.012
ENSG00000147162 E043 35.8693167 1.464963e-03 1.138644e-02 8.761822e-02 X 71563130 71563136 7 + 1.615 1.477 -0.471
ENSG00000147162 E044 81.5094853 1.063632e-02 2.432981e-01 5.332861e-01 X 71563137 71563246 110 + 1.914 1.849 -0.219
ENSG00000147162 E045 129.8759019 7.672320e-04 2.188883e-01 5.056330e-01 X 71563329 71563499 171 + 2.095 2.058 -0.126
ENSG00000147162 E046 74.0727411 4.994681e-03 4.459303e-01 7.203347e-01 X 71564601 71564663 63 + 1.799 1.838 0.130
ENSG00000147162 E047 72.2624827 1.611687e-03 1.317823e-01 3.851495e-01 X 71564664 71564753 90 + 1.769 1.834 0.218
ENSG00000147162 E048 134.1863436 3.362422e-04 8.664816e-01 9.539942e-01 X 71567500 71567752 253 + 2.079 2.084 0.016
ENSG00000147162 E049 0.1176306 1.173453e-02 1.992480e-01   X 71567753 71567973 221 + 0.141 0.000 -13.213
ENSG00000147162 E050 96.0599042 2.083866e-03 6.044292e-01 8.274383e-01 X 71567993 71568116 124 + 1.924 1.944 0.067
ENSG00000147162 E051 756.8121817 5.815570e-05 1.153626e-05 3.871789e-04 X 71573620 71575892 2273 + 2.864 2.817 -0.157

Help

Please Click HERE to learn more details about the results from DEXseq.