ENSG00000147206

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000395065 ENSG00000147206 No_inf pgKDN_inf NXF3 protein_coding protein_coding 23.01209 22.36592 23.72024 1.319441 3.027524 0.08477925 12.783506 10.868287 12.4181264 0.7200340 0.7163216 0.1921574 0.56680000 0.489850 0.551850 0.062000 0.85626796 0.04324636 TRUE TRUE
ENST00000468528 ENSG00000147206 No_inf pgKDN_inf NXF3 protein_coding retained_intron 23.01209 22.36592 23.72024 1.319441 3.027524 0.08477925 2.800322 1.195927 6.0409086 1.1959268 2.2100613 2.3270095 0.10677500 0.046125 0.226125 0.180000 0.25698886 0.04324636   FALSE
ENST00000470724 ENSG00000147206 No_inf pgKDN_inf NXF3 protein_coding retained_intron 23.01209 22.36592 23.72024 1.319441 3.027524 0.08477925 1.219610 1.875039 0.8128716 1.2025949 0.8128716 -1.1958549 0.05250833 0.085100 0.030225 -0.054875 0.82311344 0.04324636 FALSE FALSE
MSTRG.30275.1 ENSG00000147206 No_inf pgKDN_inf NXF3 protein_coding   23.01209 22.36592 23.72024 1.319441 3.027524 0.08477925 1.771567 1.144362 2.6600811 0.6607385 0.5933856 1.2097873 0.07499167 0.051225 0.106950 0.055725 0.56861666 0.04324636 TRUE TRUE
MSTRG.30275.3 ENSG00000147206 No_inf pgKDN_inf NXF3 protein_coding   23.01209 22.36592 23.72024 1.319441 3.027524 0.08477925 2.954726 4.956363 0.5837580 0.7530251 0.5837580 -3.0642429 0.13543333 0.223525 0.039525 -0.184000 0.04324636 0.04324636 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000147206 E001 0.3631878 0.0164091467 0.4184836302   X 103075716 103075809 94 - 0.194 0.084 -1.413
ENSG00000147206 E002 0.9736308 0.0126001943 0.2678987078 0.561403773 X 103075810 103075823 14 - 0.382 0.214 -1.150
ENSG00000147206 E003 11.5592341 0.0011981142 0.7034983916 0.879418213 X 103075824 103076000 177 - 1.109 1.080 -0.105
ENSG00000147206 E004 8.9710618 0.0014838524 0.6726571957 0.864445963 X 103076241 103076275 35 - 1.014 0.977 -0.135
ENSG00000147206 E005 11.0309144 0.0013061034 0.2406386505 0.529847111 X 103076276 103076301 26 - 1.128 1.032 -0.349
ENSG00000147206 E006 19.3598813 0.0007472817 0.0897704603 0.311238059 X 103077614 103077674 61 - 1.362 1.255 -0.376
ENSG00000147206 E007 18.6088327 0.0007136111 0.0471271292 0.213286515 X 103077675 103077734 60 - 1.357 1.228 -0.451
ENSG00000147206 E008 8.0611807 0.0017765974 0.0555122656 0.234694562 X 103077735 103077746 12 - 1.048 0.867 -0.676
ENSG00000147206 E009 14.0043728 0.0194697325 0.5709193689 0.807213476 X 103078560 103078621 62 - 1.203 1.144 -0.210
ENSG00000147206 E010 9.2099215 0.0787173066 0.8113670649 0.930524525 X 103078622 103078632 11 - 1.037 0.977 -0.220
ENSG00000147206 E011 12.8347932 0.0031061741 0.6169016023 0.834072122 X 103079221 103079263 43 - 1.109 1.151 0.149
ENSG00000147206 E012 10.5910114 0.0501875700 0.9068505988 0.970327113 X 103079359 103079382 24 - 1.059 1.057 -0.008
ENSG00000147206 E013 18.9278755 0.0007138403 0.4934984049 0.755398224 X 103079383 103079474 92 - 1.317 1.275 -0.150
ENSG00000147206 E014 14.0104323 0.0009770369 0.5359774571 0.785360123 X 103079584 103079642 59 - 1.196 1.151 -0.159
ENSG00000147206 E015 0.2451451 0.0161824398 0.8200970620   X 103079643 103079727 85 - 0.108 0.084 -0.413
ENSG00000147206 E016 17.1032333 0.0008370307 0.0351609704 0.179478684 X 103079763 103079870 108 - 1.155 1.308 0.540
ENSG00000147206 E017 5.8480194 0.0043332535 0.0351264920 0.179418972 X 103079871 103080012 142 - 0.669 0.914 0.974
ENSG00000147206 E018 10.5677649 0.0013434116 0.6252569408 0.838683077 X 103080013 103080068 56 - 1.080 1.040 -0.144
ENSG00000147206 E019 4.3537677 0.0168161121 0.1052844261 0.339435127 X 103080069 103080147 79 - 0.583 0.800 0.909
ENSG00000147206 E020 13.5381515 0.0010380154 0.8515244627 0.947474599 X 103080148 103080216 69 - 1.163 1.151 -0.044
ENSG00000147206 E021 11.0436536 0.0034110473 0.3540705962 0.643779912 X 103080576 103080612 37 - 1.119 1.040 -0.285
ENSG00000147206 E022 32.5233468 0.0089873016 0.0019377947 0.024961313 X 103080613 103081766 1154 - 1.388 1.591 0.696
ENSG00000147206 E023 10.6610418 0.0015757345 0.0881371987 0.307933393 X 103081767 103082095 329 - 0.963 1.117 0.562
ENSG00000147206 E024 8.5052030 0.0016536825 0.0001196138 0.002753415 X 103082096 103082254 159 - 0.695 1.095 1.535
ENSG00000147206 E025 17.4972715 0.0076636499 0.7763689189 0.914130928 X 103082255 103082364 110 - 1.247 1.270 0.079
ENSG00000147206 E026 16.6375983 0.0078840538 0.8012782932 0.925887189 X 103082760 103082848 89 - 1.226 1.249 0.083
ENSG00000147206 E027 11.9262030 0.0095303708 0.7577334454 0.904851005 X 103083004 103083073 70 - 1.119 1.095 -0.084
ENSG00000147206 E028 11.4233831 0.0015744125 0.4965140217 0.757495679 X 103083193 103083273 81 - 1.119 1.065 -0.195
ENSG00000147206 E029 13.9537079 0.0108677547 0.1100955579 0.348192957 X 103083398 103083502 105 - 1.240 1.110 -0.464
ENSG00000147206 E030 12.2513309 0.0012353153 0.1437662427 0.403722198 X 103083609 103083692 84 - 1.180 1.065 -0.413
ENSG00000147206 E031 16.0883363 0.0198746138 0.5306393280 0.781632311 X 103084342 103084495 154 - 1.254 1.206 -0.170
ENSG00000147206 E032 11.8538220 0.0011990278 0.4025181863 0.685639891 X 103084715 103084883 169 - 1.059 1.131 0.260
ENSG00000147206 E033 6.9247086 0.0690444889 0.4284500383 0.706927843 X 103092996 103093143 148 - 0.822 0.936 0.436

Help

Please Click HERE to learn more details about the results from DEXseq.