ENSG00000147535

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000419686 ENSG00000147535 No_inf pgKDN_inf PLPP5 protein_coding protein_coding 34.61841 37.43577 33.23052 3.678448 3.399605 -0.1718599 6.308496 1.008327 9.710300 1.0083274 1.7244222 3.25479936 0.18687500 0.021825 0.294175 0.272350 0.004500814 0.004500814 FALSE TRUE
ENST00000422581 ENSG00000147535 No_inf pgKDN_inf PLPP5 protein_coding protein_coding 34.61841 37.43577 33.23052 3.678448 3.399605 -0.1718599 2.861680 3.504917 1.813308 1.2093708 0.7149629 -0.94693199 0.08820000 0.104050 0.056850 -0.047200 0.829879245 0.004500814 FALSE TRUE
ENST00000424479 ENSG00000147535 No_inf pgKDN_inf PLPP5 protein_coding protein_coding 34.61841 37.43577 33.23052 3.678448 3.399605 -0.1718599 8.885735 11.007320 8.776009 0.3753552 1.4597400 -0.32649340 0.25840833 0.306225 0.263025 -0.043200 0.866801240 0.004500814 FALSE TRUE
ENST00000527758 ENSG00000147535 No_inf pgKDN_inf PLPP5 protein_coding protein_coding_CDS_not_defined 34.61841 37.43577 33.23052 3.678448 3.399605 -0.1718599 4.481862 5.920735 3.432281 2.0186380 0.8473504 -0.78484590 0.12384167 0.146975 0.105100 -0.041875 0.844348806 0.004500814   FALSE
ENST00000528814 ENSG00000147535 No_inf pgKDN_inf PLPP5 protein_coding retained_intron 34.61841 37.43577 33.23052 3.678448 3.399605 -0.1718599 4.132034 5.856026 2.829266 0.5461676 0.2287707 -1.04686542 0.11846667 0.157200 0.086250 -0.070950 0.405756750 0.004500814 TRUE FALSE
ENST00000529359 ENSG00000147535 No_inf pgKDN_inf PLPP5 protein_coding protein_coding 34.61841 37.43577 33.23052 3.678448 3.399605 -0.1718599 2.546800 2.489435 2.578968 0.4585125 1.2609994 0.05077508 0.07745000 0.065850 0.087025 0.021175 0.965536667 0.004500814 FALSE TRUE
ENST00000531483 ENSG00000147535 No_inf pgKDN_inf PLPP5 protein_coding protein_coding_CDS_not_defined 34.61841 37.43577 33.23052 3.678448 3.399605 -0.1718599 3.475741 5.555511 2.007194 0.9456458 0.5012283 -1.46416416 0.09683333 0.147075 0.058700 -0.088375 0.265350416 0.004500814   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000147535 E001 0.3627784 0.0164677283 0.440412354   8 38263130 38263137 8 - 0.191 0.085 -1.356
ENSG00000147535 E002 16.9293946 0.0201866310 0.702664262 0.87904747 8 38263138 38263406 269 - 1.272 1.231 -0.146
ENSG00000147535 E003 67.1370897 0.0033596129 0.374566187 0.66220385 8 38263407 38264316 910 - 1.807 1.842 0.119
ENSG00000147535 E004 6.2523296 0.0373465732 0.514940220 0.77129487 8 38264317 38264350 34 - 0.899 0.821 -0.300
ENSG00000147535 E005 6.2372519 0.0026904630 0.190576487 0.46977501 8 38264351 38264397 47 - 0.928 0.792 -0.526
ENSG00000147535 E006 5.4195883 0.0080790967 0.940866079 0.98327141 8 38264398 38264432 35 - 0.797 0.807 0.039
ENSG00000147535 E007 12.0853339 0.0013089830 0.553193601 0.79635386 8 38264433 38264542 110 - 1.082 1.132 0.180
ENSG00000147535 E008 10.9678857 0.0015715482 0.675225227 0.86545777 8 38264543 38264604 62 - 1.051 1.088 0.135
ENSG00000147535 E009 6.3217100 0.0163327054 0.161884988 0.43014089 8 38264739 38264949 211 - 0.756 0.922 0.644
ENSG00000147535 E010 2.8769393 0.0180853442 0.033945863 0.17541786 8 38264950 38265073 124 - 0.377 0.690 1.492
ENSG00000147535 E011 1.8521562 0.0089275346 0.772407711 0.91234280 8 38265540 38265622 83 - 0.425 0.469 0.228
ENSG00000147535 E012 17.6063321 0.0009192741 0.784567235 0.91683854 8 38266141 38266269 129 - 1.253 1.273 0.070
ENSG00000147535 E013 9.4871415 0.0051892436 0.708847862 0.88201639 8 38266270 38266311 42 - 0.994 1.031 0.135
ENSG00000147535 E014 0.3716209 0.0165836683 0.751991754   8 38266312 38266459 148 - 0.106 0.156 0.644
ENSG00000147535 E015 0.7513967 0.0157886571 0.164500193 0.43379806 8 38266980 38267000 21 - 0.106 0.318 1.965
ENSG00000147535 E016 8.0972150 0.0155159391 0.481559204 0.74660341 8 38267001 38267180 180 - 0.994 0.922 -0.269
ENSG00000147535 E017 8.7328380 0.0016412007 0.001407512 0.01947479 8 38267181 38267266 86 - 1.129 0.835 -1.093
ENSG00000147535 E018 24.7028488 0.0005871892 0.023744481 0.14103908 8 38267267 38267391 125 - 1.474 1.346 -0.442
ENSG00000147535 E019 7.0994736 0.0316802917 0.018011801 0.11838270 8 38267606 38267896 291 - 0.712 1.004 1.129
ENSG00000147535 E020 15.1165922 0.0176667398 0.784179904 0.91683854 8 38267897 38267960 64 - 1.218 1.190 -0.098
ENSG00000147535 E021 11.8198469 0.0012005670 0.001947194 0.02505600 8 38267961 38268370 410 - 0.928 1.196 0.976
ENSG00000147535 E022 13.4967675 0.0016940307 0.464098527 0.73367899 8 38268371 38268407 37 - 1.188 1.132 -0.199
ENSG00000147535 E023 12.5942519 0.0012180096 0.115990286 0.35917473 8 38268408 38268461 54 - 1.195 1.072 -0.441
ENSG00000147535 E024 4.9804723 0.0063202547 0.036738508 0.18455569 8 38268462 38268618 157 - 0.607 0.862 1.042
ENSG00000147535 E025 6.7114198 0.0021522552 0.033323066 0.17349894 8 38268619 38268822 204 - 0.735 0.965 0.891
ENSG00000147535 E026 3.8374721 0.0038149695 0.352385739 0.64241692 8 38268823 38268881 59 - 0.607 0.726 0.506
ENSG00000147535 E027 19.6776501 0.0010930406 0.030033424 0.16304204 8 38268882 38268990 109 - 1.385 1.247 -0.482
ENSG00000147535 E028 1.1086356 0.0168841783 0.963457058 0.99228699 8 38268991 38269081 91 - 0.324 0.318 -0.035
ENSG00000147535 E029 0.8716726 0.0164239821 0.413931932 0.69438618 8 38269082 38269125 44 - 0.191 0.318 0.965
ENSG00000147535 E030 10.6656868 0.0189877654 0.591428720 0.81932900 8 38269126 38269243 118 - 1.092 1.039 -0.190

Help

Please Click HERE to learn more details about the results from DEXseq.