ENSG00000147813

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000449291 ENSG00000147813 No_inf pgKDN_inf NAPRT protein_coding protein_coding 106.5485 166.6864 81.63276 6.820259 2.007707 -1.029826 49.584525 65.50081 51.996211 5.0828907 1.9485395 -0.3330491 0.49015833 0.392225 0.636800 0.244575 2.486223e-06 2.486223e-06 FALSE TRUE
ENST00000462059 ENSG00000147813 No_inf pgKDN_inf NAPRT protein_coding retained_intron 106.5485 166.6864 81.63276 6.820259 2.007707 -1.029826 7.438280 8.05380 5.482902 4.8030786 1.9980496 -0.5538913 0.07885000 0.045300 0.068325 0.023025 8.122041e-01 2.486223e-06 TRUE TRUE
ENST00000464332 ENSG00000147813 No_inf pgKDN_inf NAPRT protein_coding retained_intron 106.5485 166.6864 81.63276 6.820259 2.007707 -1.029826 15.877393 31.89639 6.170030 1.9454444 0.4354295 -2.3681594 0.13525000 0.192725 0.075650 -0.117075 1.583794e-03 2.486223e-06 FALSE TRUE
ENST00000480946 ENSG00000147813 No_inf pgKDN_inf NAPRT protein_coding retained_intron 106.5485 166.6864 81.63276 6.820259 2.007707 -1.029826 8.284235 16.28125 4.653146 0.7967418 0.6160599 -1.8047218 0.07036667 0.098450 0.056825 -0.041625 3.590832e-01 2.486223e-06 TRUE TRUE
ENST00000498076 ENSG00000147813 No_inf pgKDN_inf NAPRT protein_coding retained_intron 106.5485 166.6864 81.63276 6.820259 2.007707 -1.029826 6.829607 16.67229 1.977589 3.1385136 1.9775893 -3.0692258 0.04935833 0.100475 0.023150 -0.077325 3.497355e-02 2.486223e-06 FALSE TRUE
MSTRG.28335.1 ENSG00000147813 No_inf pgKDN_inf NAPRT protein_coding   106.5485 166.6864 81.63276 6.820259 2.007707 -1.029826 6.060355 10.61505 4.256712 1.5287341 1.2223459 -1.3162727 0.05428333 0.063025 0.053275 -0.009750 8.460466e-01 2.486223e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000147813 E001 0.0000000       8 143574754 143574774 21 -      
ENSG00000147813 E002 0.0000000       8 143574775 143574784 10 -      
ENSG00000147813 E003 0.0000000       8 143574785 143574785 1 -      
ENSG00000147813 E004 0.0000000       8 143574786 143574786 1 -      
ENSG00000147813 E005 0.0000000       8 143574787 143574787 1 -      
ENSG00000147813 E006 18.7823744 0.0007333980 3.442795e-01 6.355983e-01 8 143574788 143574900 113 - 1.216 1.285 0.245
ENSG00000147813 E007 4.0186182 0.0035486616 2.934188e-02 1.608911e-01 8 143574901 143574985 85 - 0.440 0.749 1.396
ENSG00000147813 E008 4.0733000 0.0034808564 4.259199e-01 7.048154e-01 8 143574986 143575093 108 - 0.745 0.645 -0.415
ENSG00000147813 E009 5.2459118 0.0057311775 2.160147e-01 5.020484e-01 8 143575094 143575190 97 - 0.654 0.811 0.641
ENSG00000147813 E010 22.3086963 0.0021191762 4.654737e-02 2.117359e-01 8 143575191 143575229 39 - 1.234 1.375 0.495
ENSG00000147813 E011 84.4099890 0.0001929228 4.711213e-01 7.386214e-01 8 143575230 143575345 116 - 1.881 1.907 0.086
ENSG00000147813 E012 8.9968199 0.0015663212 5.113631e-02 2.238807e-01 8 143575346 143575422 77 - 0.820 1.024 0.771
ENSG00000147813 E013 51.7876968 0.0002786394 5.112017e-01 7.684482e-01 8 143575423 143575431 9 - 1.709 1.681 -0.093
ENSG00000147813 E014 95.3427420 0.0001670741 1.749024e-01 4.487320e-01 8 143575432 143575525 94 - 1.979 1.938 -0.139
ENSG00000147813 E015 0.1265070 0.0122929388 1.000000e+00   8 143575600 143575621 22 - 0.000 0.069 8.874
ENSG00000147813 E016 42.8492528 0.0003806880 4.340903e-01 7.113368e-01 8 143575622 143575622 1 - 1.634 1.598 -0.123
ENSG00000147813 E017 87.6728771 0.0002006898 2.367522e-01 5.256600e-01 8 143575623 143575702 80 - 1.941 1.903 -0.127
ENSG00000147813 E018 96.7074570 0.0037593836 9.048182e-01 9.695265e-01 8 143576078 143576162 85 - 1.960 1.956 -0.012
ENSG00000147813 E019 36.1779513 0.0004897061 1.600474e-12 2.021544e-10 8 143576163 143576431 269 - 1.197 1.634 1.514
ENSG00000147813 E020 51.2541179 0.0002670025 6.589049e-01 8.575622e-01 8 143576432 143576439 8 - 1.671 1.692 0.070
ENSG00000147813 E021 81.6992066 0.0002217124 8.392829e-01 9.423602e-01 8 143576440 143576572 133 - 1.889 1.883 -0.020
ENSG00000147813 E022 5.1133679 0.0029896737 2.481593e-01 5.389692e-01 8 143576646 143576842 197 - 0.654 0.799 0.596
ENSG00000147813 E023 0.0000000       8 143576843 143576942 100 -      
ENSG00000147813 E024 0.0000000       8 143576943 143577061 119 -      
ENSG00000147813 E025 0.0000000       8 143577062 143577177 116 -      
ENSG00000147813 E026 0.0000000       8 143577178 143577266 89 -      
ENSG00000147813 E027 0.0000000       8 143577267 143577268 2 -      
ENSG00000147813 E028 0.7607769 0.4452830353 2.549551e-01 5.468682e-01 8 143577269 143577399 131 - 0.000 0.306 11.459
ENSG00000147813 E029 32.6226207 0.0013118697 1.074136e-01 3.435069e-01 8 143577657 143577739 83 - 1.553 1.465 -0.300
ENSG00000147813 E030 1.3790540 0.0098392980 2.839960e-01 5.777256e-01 8 143577740 143577815 76 - 0.231 0.405 1.133
ENSG00000147813 E031 44.7506596 0.0003292427 8.097429e-02 2.924183e-01 8 143577816 143577860 45 - 1.681 1.602 -0.270
ENSG00000147813 E032 65.8568469 0.0002478685 9.441734e-01 9.845722e-01 8 143577861 143577943 83 - 1.790 1.794 0.013
ENSG00000147813 E033 13.7323377 0.0018574665 3.929213e-02 1.919554e-01 8 143577944 143578092 149 - 1.005 1.186 0.655
ENSG00000147813 E034 101.3474758 0.0001927110 2.966340e-03 3.428039e-02 8 143578093 143578352 260 - 2.036 1.948 -0.296
ENSG00000147813 E035 0.0000000       8 143578586 143578649 64 -      

Help

Please Click HERE to learn more details about the results from DEXseq.