ENSG00000149294

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000316851 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding protein_coding 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 0.6154666 0.0000000 0.6962463 0.0000000 0.4201836 6.14209947 0.03018333 0.000000 0.052300 0.052300 0.856056662 0.005647834 FALSE TRUE
ENST00000525355 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding retained_intron 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 1.8214889 0.2684462 0.5794386 0.2684462 0.5794386 1.08194277 0.10083333 0.111925 0.040275 -0.071650 0.830466730 0.005647834 FALSE TRUE
ENST00000529356 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding protein_coding 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 0.3029179 0.2822316 0.3489361 0.1645147 0.2017430 0.29661498 0.04955833 0.112650 0.026200 -0.086450 0.611133225 0.005647834 FALSE TRUE
ENST00000530543 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding protein_coding 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 0.2658611 0.7975832 0.0000000 0.3544425 0.0000000 -6.33553894 0.13014167 0.390425 0.000000 -0.390425 0.005647834 0.005647834 FALSE FALSE
ENST00000531044 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding protein_coding 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 2.4797779 0.2833036 2.2319326 0.1069674 1.2950282 2.93427647 0.16851667 0.150100 0.167850 0.017750 0.854938623 0.005647834 FALSE TRUE
ENST00000533073 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding protein_coding 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 1.0196647 0.0000000 1.4658491 0.0000000 1.4658491 7.20540138 0.05984167 0.000000 0.104300 0.104300 1.000000000 0.005647834 FALSE TRUE
ENST00000533226 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding retained_intron 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 0.1519021 0.2515308 0.0000000 0.1572232 0.0000000 -4.70890881 0.04328333 0.123375 0.000000 -0.123375 0.121299502 0.005647834 FALSE FALSE
ENST00000534046 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding retained_intron 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 0.5488019 0.1493955 0.1552025 0.1493955 0.1552025 0.05162458 0.05037500 0.089875 0.011050 -0.078825 0.810119907 0.005647834 FALSE FALSE
ENST00000618266 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding protein_coding 13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 0.2606412 0.0000000 0.6905047 0.0000000 0.6905047 6.13032275 0.02080000 0.000000 0.057225 0.057225 1.000000000 0.005647834 FALSE TRUE
MSTRG.5545.26 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding   13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 2.0610892 0.0000000 2.9705777 0.0000000 1.0674846 8.21944818 0.11478333 0.000000 0.226475 0.226475 0.315282744 0.005647834 FALSE TRUE
MSTRG.5545.8 ENSG00000149294 No_inf pgKDN_inf NCAM1 protein_coding   13.44775 2.077286 13.3029 0.2630614 0.5493876 2.673125 3.1255523 0.0000000 2.9518038 0.0000000 1.7042491 8.21033227 0.17944167 0.000000 0.224825 0.224825 0.824068338 0.005647834 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000149294 E001 0.0000000       11 112961247 112961274 28 +      
ENSG00000149294 E002 0.0000000       11 112961275 112961367 93 +      
ENSG00000149294 E003 0.0000000       11 112961368 112961393 26 +      
ENSG00000149294 E004 0.0000000       11 112961394 112961401 8 +      
ENSG00000149294 E005 0.0000000       11 112961402 112961419 18 +      
ENSG00000149294 E006 0.0000000       11 112961420 112961424 5 +      
ENSG00000149294 E007 0.0000000       11 112961425 112961434 10 +      
ENSG00000149294 E008 0.0000000       11 112961435 112961435 1 +      
ENSG00000149294 E009 0.0000000       11 112961436 112961436 1 +      
ENSG00000149294 E010 0.0000000       11 112961437 112961438 2 +      
ENSG00000149294 E011 0.1170040 0.0119049871 0.288973697   11 112961439 112961479 41 + 0.028 0.000 -8.240
ENSG00000149294 E012 1.8962717 0.0074279765 1.000000000 1.00000000 11 112961480 112961660 181 + 0.300 0.280 -0.137
ENSG00000149294 E013 1.1880271 0.0105480284 0.696176658 0.87604054 11 112961661 112961664 4 + 0.203 0.280 0.600
ENSG00000149294 E014 0.0000000       11 113003846 113003856 11 +      
ENSG00000149294 E015 0.0000000       11 113040926 113041216 291 +      
ENSG00000149294 E016 0.0000000       11 113130694 113130799 106 +      
ENSG00000149294 E017 0.1186381 0.0120357715 0.288990013   11 113132928 113133434 507 + 0.028 0.000 -10.127
ENSG00000149294 E018 0.0000000       11 113133435 113133448 14 +      
ENSG00000149294 E019 0.0000000       11 113133449 113133951 503 +      
ENSG00000149294 E020 1.3050310 0.0102254161 0.780885222 0.91563066 11 113202379 113202385 7 + 0.221 0.280 0.448
ENSG00000149294 E021 2.2590618 0.0080502529 0.555587374 0.79801626 11 113202386 113202453 68 + 0.328 0.448 0.683
ENSG00000149294 E022 5.7070190 0.0220745050 0.700480200 0.87797339 11 113204286 113204504 219 + 0.593 0.664 0.310
ENSG00000149294 E023 5.2079208 0.0028040094 0.513196459 0.77015882 11 113205523 113205666 144 + 0.578 0.448 -0.622
ENSG00000149294 E024 5.1108345 0.0027485408 0.544293074 0.79077399 11 113206043 113206180 138 + 0.554 0.664 0.485
ENSG00000149294 E025 4.1551984 0.0282375520 0.784546538 0.91683854 11 113207261 113207378 118 + 0.503 0.448 -0.275
ENSG00000149294 E026 5.3380625 0.0063218109 0.957412209 0.98981997 11 113207833 113208002 170 + 0.578 0.570 -0.037
ENSG00000149294 E027 3.6619866 0.0040558616 0.383410191 0.66950978 11 113214369 113214511 143 + 0.475 0.280 -1.137
ENSG00000149294 E028 0.3533378 0.0165609881 1.000000000   11 113221296 113221325 30 + 0.079 0.000 -11.382
ENSG00000149294 E029 0.7247753 0.0155313088 0.049099858 0.21851240 11 113221326 113221903 578 + 0.102 0.448 2.770
ENSG00000149294 E030 0.2372762 0.2184989181 0.543158886   11 113231196 113231273 78 + 0.054 0.000 -10.730
ENSG00000149294 E031 0.7189529 0.3553658663 0.321344039 0.61441326 11 113231380 113231644 265 + 0.124 0.280 1.447
ENSG00000149294 E032 3.6696882 0.0041560126 0.382921412 0.66907049 11 113231645 113231795 151 + 0.475 0.280 -1.137
ENSG00000149294 E033 3.5620598 0.0063167421 0.963972226 0.99241960 11 113232170 113232261 92 + 0.456 0.448 -0.037
ENSG00000149294 E034 2.7242270 0.0052937103 0.637208409 0.84516063 11 113232262 113232324 63 + 0.391 0.280 -0.689
ENSG00000149294 E035 1.2959712 0.0107994336 0.715587837 0.88532588 11 113232325 113232354 30 + 0.238 0.000 -12.615
ENSG00000149294 E036 2.3522705 0.0844118222 0.277975471 0.57121423 11 113232718 113232792 75 + 0.366 0.000 -13.062
ENSG00000149294 E037 1.7649247 0.0287282277 0.419209724 0.69875916 11 113232793 113232794 2 + 0.300 0.000 -12.857
ENSG00000149294 E038 2.1175708 0.0309125078 0.305282326 0.59859899 11 113232795 113232814 20 + 0.341 0.000 -12.996
ENSG00000149294 E039 3.9152930 0.1455847069 0.313437004 0.60658391 11 113233147 113233257 111 + 0.465 0.664 0.915
ENSG00000149294 E040 2.9898379 0.0291428881 0.034408452 0.17717445 11 113233258 113233317 60 + 0.366 0.742 1.771
ENSG00000149294 E041 5.4949534 0.0032118687 0.014925273 0.10474641 11 113235033 113235164 132 + 0.546 0.916 1.522
ENSG00000149294 E042 0.1271363 0.0126237573 0.011973365   11 113236301 113236314 14 + 0.000 0.280 14.465
ENSG00000149294 E043 0.1271363 0.0126237573 0.011973365   11 113236315 113236315 1 + 0.000 0.280 14.465
ENSG00000149294 E044 0.0000000       11 113240507 113240785 279 +      
ENSG00000149294 E045 0.0000000       11 113240786 113240833 48 +      
ENSG00000149294 E046 0.0000000       11 113242805 113242846 42 +      
ENSG00000149294 E047 0.2363338 0.0162865317 0.622111079   11 113243552 113243790 239 + 0.054 0.000 -10.938
ENSG00000149294 E048 0.1186381 0.0120357715 0.288990013   11 113246108 113246367 260 + 0.028 0.000 -10.127
ENSG00000149294 E049 0.2356421 0.0158796694 0.621079263   11 113246368 113246370 3 + 0.054 0.000 -10.939
ENSG00000149294 E050 0.0000000       11 113255874 113255876 3 +      
ENSG00000149294 E051 4.2757526 0.0040914003 0.735531983 0.89515046 11 113255877 113255949 73 + 0.503 0.570 0.311
ENSG00000149294 E052 5.1076421 0.0413778205 0.971575863 0.99453344 11 113255950 113256001 52 + 0.562 0.570 0.033
ENSG00000149294 E053 0.2537694 0.0164228123 0.001127861   11 113260091 113260145 55 + 0.000 0.448 15.347
ENSG00000149294 E054 3.2112452 0.0433422579 0.902926544 0.96886466 11 113260146 113260180 35 + 0.424 0.448 0.126
ENSG00000149294 E055 4.7584468 0.0047580037 0.458112746 0.73005120 11 113260181 113260323 143 + 0.530 0.664 0.600
ENSG00000149294 E056 0.1176306 0.0120194680 0.289142120   11 113260324 113260387 64 + 0.028 0.000 -10.127
ENSG00000149294 E057 0.5896716 0.0162754420 1.000000000 1.00000000 11 113262846 113262902 57 + 0.124 0.000 -11.901
ENSG00000149294 E058 3.6845847 0.0040027733 0.557295186 0.79932874 11 113262903 113265197 2295 + 0.456 0.570 0.548
ENSG00000149294 E059 0.0000000       11 113269969 113270187 219 +      
ENSG00000149294 E060 0.0000000       11 113270188 113270395 208 +      
ENSG00000149294 E061 5.6069599 0.0949608082 0.197459821 0.47874980 11 113271760 113271876 117 + 0.570 0.808 0.996
ENSG00000149294 E062 0.0000000       11 113272933 113273048 116 +      
ENSG00000149294 E063 0.0000000       11 113273049 113273748 700 +      
ENSG00000149294 E064 86.4405535 0.0002922855 0.003993111 0.04238069 11 113275267 113278436 3170 + 1.672 1.526 -0.499

Help

Please Click HERE to learn more details about the results from DEXseq.