ENSG00000149743

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000317459 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding protein_coding 23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 1.3748636 2.4539663 0.0000000 1.4355387 0.0000000 -7.9448387 0.05439167 0.074425 0.000000 -0.074425 0.647179580 0.003692917 FALSE  
ENST00000394546 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding protein_coding 23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 1.3000309 0.0000000 2.1281177 0.0000000 1.2395503 7.7401975 0.07480000 0.000000 0.173825 0.173825 0.306292601 0.003692917 FALSE  
ENST00000394547 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding protein_coding 23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 2.4891922 2.1719132 3.6592695 2.1719132 2.1129063 0.7498992 0.17998333 0.050475 0.358500 0.308025 0.715073438 0.003692917 FALSE  
ENST00000536234 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding retained_intron 23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 1.2127335 2.5774528 0.0000000 0.4805929 0.0000000 -8.0153887 0.04649167 0.086775 0.000000 -0.086775 0.003692917 0.003692917 FALSE  
ENST00000541928 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding retained_intron 23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 0.9881943 2.9645828 0.0000000 2.0956165 0.0000000 -8.2165435 0.04430000 0.132900 0.000000 -0.132900 0.772262814 0.003692917 TRUE  
ENST00000546133 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding protein_coding 23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 1.2240104 0.5432325 0.7218613 0.5432325 0.7218613 0.4036843 0.06426667 0.031875 0.024025 -0.007850 0.859457988 0.003692917 FALSE  
MSTRG.4906.13 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding   23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 1.1061923 3.3185768 0.0000000 1.7468049 0.0000000 -8.3787616 0.05451667 0.163550 0.000000 -0.163550 0.262844296 0.003692917 FALSE  
MSTRG.4906.16 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding   23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 2.4891056 4.0896726 1.3243810 1.3891512 0.8015946 -1.6193381 0.12214167 0.116250 0.149600 0.033350 0.907278280 0.003692917 FALSE  
MSTRG.4906.17 ENSG00000149743 No_inf pgKDN_inf TRPT1 protein_coding   23.32465 32.3477 14.67101 6.773348 5.149381 -1.140158 9.0357483 11.8335922 5.4348509 7.0854457 5.4348509 -1.1211423 0.24864167 0.269750 0.180825 -0.088925 0.886676117 0.003692917    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000149743 E001 0.0000000       11 64223799 64223799 1 -      
ENSG00000149743 E002 0.0000000       11 64223800 64223815 16 -      
ENSG00000149743 E003 0.0000000       11 64223816 64223829 14 -      
ENSG00000149743 E004 0.0000000       11 64223830 64223832 3 -      
ENSG00000149743 E005 0.0000000       11 64223833 64223841 9 -      
ENSG00000149743 E006 0.0000000       11 64223842 64223852 11 -      
ENSG00000149743 E007 0.0000000       11 64223853 64223855 3 -      
ENSG00000149743 E008 0.0000000       11 64223856 64223876 21 -      
ENSG00000149743 E009 1.2403013 0.010900137 0.823061303 0.93566477 11 64223877 64223926 50 - 0.338 0.315 -0.142
ENSG00000149743 E010 3.5603719 0.011767712 0.042708068 0.20138284 11 64223927 64223967 41 - 0.786 0.537 -1.065
ENSG00000149743 E011 0.6347699 0.018305662 0.205793364 0.48921277 11 64223968 64224068 101 - 0.000 0.246 12.498
ENSG00000149743 E012 0.6348960 0.014346270 0.203824875 0.48648453 11 64224069 64224099 31 - 0.000 0.246 12.498
ENSG00000149743 E013 7.6499494 0.001994028 0.035464287 0.18027623 11 64224100 64224162 63 - 1.018 0.832 -0.702
ENSG00000149743 E014 7.7060015 0.001838766 0.681634443 0.86827810 11 64224163 64224202 40 - 0.907 0.887 -0.075
ENSG00000149743 E015 4.8894632 0.003016468 0.189268005 0.46788034 11 64224203 64224210 8 - 0.574 0.769 0.828
ENSG00000149743 E016 1.3872365 0.009675945 0.147139423 0.40828408 11 64224211 64224213 3 - 0.144 0.402 1.957
ENSG00000149743 E017 2.0293685 0.060762891 0.006384496 0.05910426 11 64224214 64224284 71 - 0.000 0.537 14.176
ENSG00000149743 E018 7.8721659 0.002126248 0.393820568 0.67867322 11 64224285 64224341 57 - 0.813 0.928 0.443
ENSG00000149743 E019 1.7670729 0.027116676 0.066646081 0.26002035 11 64224342 64224491 150 - 0.144 0.475 2.336
ENSG00000149743 E020 0.8885393 0.012620866 0.091778382 0.31456375 11 64224492 64224542 51 - 0.000 0.315 12.984
ENSG00000149743 E021 13.3308309 0.034142375 0.968687095 0.99364123 11 64224543 64224653 111 - 1.079 1.116 0.131
ENSG00000149743 E022 11.5399206 0.001454279 0.318579569 0.61126173 11 64224654 64224717 64 - 1.093 1.032 -0.223
ENSG00000149743 E023 0.8800410 0.189442667 0.508635273 0.76685586 11 64224759 64224794 36 - 0.144 0.282 1.221
ENSG00000149743 E024 2.6119947 0.006768432 0.855080646 0.94898081 11 64224795 64224800 6 - 0.526 0.517 -0.043
ENSG00000149743 E025 13.2786390 0.003791785 0.228865247 0.51757560 11 64224801 64224970 170 - 1.157 1.084 -0.262
ENSG00000149743 E026 7.5967866 0.011276730 0.935022269 0.98132089 11 64224971 64225498 528 - 0.862 0.896 0.128
ENSG00000149743 E027 7.0836995 0.002111214 0.595602264 0.82221742 11 64225499 64225580 82 - 0.885 0.851 -0.130
ENSG00000149743 E028 3.6479037 0.004251622 0.089333763 0.31030638 11 64225786 64225869 84 - 0.410 0.682 1.279
ENSG00000149743 E029 0.2543986 0.016341607 1.000000000   11 64225870 64226049 180 - 0.000 0.116 11.176
ENSG00000149743 E030 0.0000000       11 64226050 64226061 12 -      
ENSG00000149743 E031 0.0000000       11 64226062 64226190 129 -      
ENSG00000149743 E032 0.0000000       11 64226191 64226254 64 -      

Help

Please Click HERE to learn more details about the results from DEXseq.