ENSG00000151923

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000369093 ENSG00000151923 No_inf pgKDN_inf TIAL1 protein_coding protein_coding 36.62053 29.55111 37.49229 1.897205 1.862579 0.3432782 2.456414 3.353572 1.856249 0.3647522 0.2636976 -0.8498529 0.07219167 0.115600 0.050425 -0.065175 3.915025e-01 2.354413e-07 FALSE TRUE
ENST00000436547 ENSG00000151923 No_inf pgKDN_inf TIAL1 protein_coding protein_coding 36.62053 29.55111 37.49229 1.897205 1.862579 0.3432782 3.573169 3.537419 4.347299 0.3527768 0.2622215 0.2966642 0.10275833 0.122075 0.117125 -0.004950 1.000000e+00 2.354413e-07 FALSE TRUE
ENST00000470781 ENSG00000151923 No_inf pgKDN_inf TIAL1 protein_coding retained_intron 36.62053 29.55111 37.49229 1.897205 1.862579 0.3432782 1.517222 4.551667 0.000000 0.7840236 0.0000000 -8.8334174 0.05331667 0.159950 0.000000 -0.159950 2.354413e-07 2.354413e-07 TRUE TRUE
ENST00000489822 ENSG00000151923 No_inf pgKDN_inf TIAL1 protein_coding retained_intron 36.62053 29.55111 37.49229 1.897205 1.862579 0.3432782 2.111410 0.000000 2.546553 0.0000000 0.4121203 7.9980559 0.05217500 0.000000 0.069850 0.069850 3.163630e-04 2.354413e-07 TRUE TRUE
MSTRG.4036.4 ENSG00000151923 No_inf pgKDN_inf TIAL1 protein_coding   36.62053 29.55111 37.49229 1.897205 1.862579 0.3432782 18.160257 9.653036 22.185512 1.5571750 1.3290359 1.1997196 0.48468333 0.323925 0.591625 0.267700 8.732240e-03 2.354413e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000151923 E001 16.0292195 0.0011582989 6.160514e-07 3.001456e-05 10 119571802 119573464 1663 - 1.008 1.378 1.319
ENSG00000151923 E002 62.1784033 0.0002882211 1.806936e-08 1.225853e-06 10 119573465 119575218 1754 - 1.686 1.891 0.693
ENSG00000151923 E003 9.5873975 0.0129527379 2.512268e-01 5.425268e-01 10 119575219 119575398 180 - 0.966 1.077 0.410
ENSG00000151923 E004 4.4131956 0.0444772911 8.790339e-01 9.590728e-01 10 119575399 119575411 13 - 0.719 0.747 0.113
ENSG00000151923 E005 5.4192779 0.0080061974 2.626875e-01 5.554469e-01 10 119575412 119575424 13 - 0.738 0.867 0.508
ENSG00000151923 E006 58.0042548 0.0069137415 6.475147e-01 8.510696e-01 10 119575425 119575791 367 - 1.760 1.782 0.076
ENSG00000151923 E007 39.1595651 0.0014036082 3.087810e-01 6.021469e-01 10 119576611 119576750 140 - 1.628 1.579 -0.167
ENSG00000151923 E008 2.3530272 0.0080228003 1.923782e-01 4.722820e-01 10 119576751 119576775 25 - 0.423 0.608 0.890
ENSG00000151923 E009 3.3839062 0.0048700140 3.818595e-04 7.038692e-03 10 119576776 119576846 71 - 0.338 0.819 2.250
ENSG00000151923 E010 2.9922353 0.0049879074 7.723817e-03 6.749454e-02 10 119576847 119576905 59 - 0.382 0.747 1.697
ENSG00000151923 E011 5.2152881 0.0151139688 1.013268e-02 8.096006e-02 10 119576906 119577079 174 - 0.609 0.923 1.270
ENSG00000151923 E012 35.9388850 0.0003896778 7.897249e-01 9.193996e-01 10 119577080 119577203 124 - 1.574 1.561 -0.045
ENSG00000151923 E013 0.1187032 0.0118828377 5.810986e-01   10 119577204 119577214 11 - 0.092 0.000 -10.375
ENSG00000151923 E014 17.4095217 0.0022806159 4.285976e-01 7.071054e-01 10 119577451 119577474 24 - 1.237 1.292 0.194
ENSG00000151923 E015 22.6467777 0.0007790020 7.507130e-01 9.016993e-01 10 119577475 119577535 61 - 1.364 1.383 0.066
ENSG00000151923 E016 25.4073237 0.0005446478 6.813581e-01 8.682781e-01 10 119577641 119577736 96 - 1.433 1.410 -0.082
ENSG00000151923 E017 13.1337567 0.0010791833 1.277083e-01 3.788680e-01 10 119578726 119578746 21 - 1.206 1.086 -0.428
ENSG00000151923 E018 13.1343873 0.0010095773 1.274121e-01 3.785214e-01 10 119578747 119578766 20 - 1.206 1.086 -0.428
ENSG00000151923 E019 17.3582638 0.0055089971 2.102987e-02 1.309880e-01 10 119578767 119578834 68 - 1.341 1.169 -0.609
ENSG00000151923 E020 0.7436877 0.0267612261 3.676713e-01 6.563293e-01 10 119578835 119578940 106 - 0.168 0.305 1.112
ENSG00000151923 E021 18.3117236 0.0203297644 7.252426e-01 8.897308e-01 10 119579935 119580010 76 - 1.303 1.269 -0.119
ENSG00000151923 E022 3.7078524 0.0045260676 9.658674e-02 3.235797e-01 10 119580011 119580470 460 - 0.555 0.766 0.901
ENSG00000151923 E023 1.3343876 0.0600370841 4.753595e-01 7.419487e-01 10 119580471 119580538 68 - 0.423 0.305 -0.695
ENSG00000151923 E024 3.8180189 0.0036806936 2.679796e-01 5.614690e-01 10 119580539 119580846 308 - 0.609 0.747 0.582
ENSG00000151923 E025 1.4718812 0.0132981441 8.941444e-01 9.649975e-01 10 119581733 119581921 189 - 0.382 0.403 0.112
ENSG00000151923 E026 20.4513259 0.0007299154 1.306138e-01 3.833548e-01 10 119581922 119582009 88 - 1.377 1.280 -0.338
ENSG00000151923 E027 15.1207209 0.0011463301 1.099477e-03 1.611865e-02 10 119582169 119582223 55 - 1.313 1.068 -0.870
ENSG00000151923 E028 13.1025064 0.0011308249 2.129581e-02 1.320497e-01 10 119582459 119582530 72 - 1.231 1.048 -0.653
ENSG00000151923 E029 10.1018537 0.0017788516 1.987232e-01 4.801643e-01 10 119582531 119582557 27 - 1.098 0.985 -0.415
ENSG00000151923 E030 4.5476454 0.0215602718 5.043604e-01 7.635055e-01 10 119582558 119582608 51 - 0.699 0.785 0.347
ENSG00000151923 E031 7.7487943 0.0027021781 2.902858e-02 1.598231e-01 10 119588152 119588166 15 - 1.037 0.819 -0.820
ENSG00000151923 E032 13.9258985 0.0010179310 4.049633e-03 4.280088e-02 10 119588167 119588248 82 - 1.271 1.048 -0.794
ENSG00000151923 E033 0.3700180 0.1766099608 5.759154e-01   10 119588326 119588357 32 - 0.092 0.179 1.113
ENSG00000151923 E034 0.3724725 0.0165781058 5.363502e-01   10 119591976 119592113 138 - 0.092 0.179 1.112
ENSG00000151923 E035 0.2373413 0.0157007852 2.701789e-01   10 119592255 119592296 42 - 0.168 0.000 -11.310
ENSG00000151923 E036 0.0000000       10 119593448 119593451 4 -      
ENSG00000151923 E037 0.9606659 0.0124885007 1.851445e-01 4.626903e-01 10 119593452 119593513 62 - 0.382 0.179 -1.472
ENSG00000151923 E038 21.6409838 0.0050259545 4.480221e-05 1.219154e-03 10 119596434 119597029 596 - 1.473 1.190 -0.986

Help

Please Click HERE to learn more details about the results from DEXseq.