ENSG00000152061

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000251507 ENSG00000152061 No_inf pgKDN_inf RABGAP1L protein_coding protein_coding 34.5592 31.0484 40.93723 1.912815 1.072599 0.3987822 6.590730 2.727424 11.850760 2.7274240 2.2849045 2.11530561 0.17885833 0.079000 0.293650 0.214650 0.03948958 0.03948958 FALSE TRUE
ENST00000367690 ENSG00000152061 No_inf pgKDN_inf RABGAP1L protein_coding protein_coding 34.5592 31.0484 40.93723 1.912815 1.072599 0.3987822 1.807801 1.391799 2.026678 0.2715616 0.2990227 0.53893828 0.05239167 0.044750 0.049075 0.004325 0.97043431 0.03948958 FALSE TRUE
ENST00000485114 ENSG00000152061 No_inf pgKDN_inf RABGAP1L protein_coding protein_coding 34.5592 31.0484 40.93723 1.912815 1.072599 0.3987822 2.571441 3.652191 1.525266 0.5998771 0.6790597 -1.25421806 0.07838333 0.117325 0.037875 -0.079450 0.33796106 0.03948958   FALSE
ENST00000681986 ENSG00000152061 No_inf pgKDN_inf RABGAP1L protein_coding protein_coding 34.5592 31.0484 40.93723 1.912815 1.072599 0.3987822 2.901697 1.473112 3.789139 0.8554959 0.2716317 1.35704467 0.08418333 0.051300 0.092500 0.041200 0.59836033 0.03948958 FALSE TRUE
MSTRG.2281.4 ENSG00000152061 No_inf pgKDN_inf RABGAP1L protein_coding   34.5592 31.0484 40.93723 1.912815 1.072599 0.3987822 6.829377 6.824757 9.193480 1.7686526 2.8193308 0.42928944 0.19083333 0.211275 0.221650 0.010375 1.00000000 0.03948958 FALSE TRUE
MSTRG.2281.7 ENSG00000152061 No_inf pgKDN_inf RABGAP1L protein_coding   34.5592 31.0484 40.93723 1.912815 1.072599 0.3987822 10.574498 9.955837 9.668772 3.4710278 3.6213604 -0.04216694 0.31964167 0.340600 0.234975 -0.105625 0.93671018 0.03948958 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000152061 E001 0.2457744 0.0168614381 8.325054e-01   1 174159410 174159516 107 + 0.084 0.108 0.407
ENSG00000152061 E002 0.1271363 0.0124951683 4.078495e-01   1 174159517 174159519 3 + 0.000 0.108 12.298
ENSG00000152061 E003 0.3730368 0.0167891994 4.287612e-01   1 174159520 174159532 13 + 0.084 0.194 1.407
ENSG00000152061 E004 2.3420759 0.0058471310 2.051607e-01 4.884407e-01 1 174159533 174159580 48 + 0.431 0.613 0.866
ENSG00000152061 E005 2.2149396 0.0061522053 3.002203e-01 5.930779e-01 1 174159581 174159589 9 + 0.431 0.582 0.729
ENSG00000152061 E006 4.7733630 0.0029868889 4.967981e-01 7.576703e-01 1 174159590 174159657 68 + 0.720 0.803 0.333
ENSG00000152061 E007 0.3611443 0.2175803009 8.133843e-01   1 174204807 174204857 51 + 0.154 0.108 -0.592
ENSG00000152061 E008 8.8562602 0.0017656747 4.026108e-01 6.857110e-01 1 174219125 174219184 60 + 1.024 0.949 -0.277
ENSG00000152061 E009 14.0504680 0.0161179307 2.078016e-01 4.914740e-01 1 174219185 174219295 111 + 1.223 1.108 -0.410
ENSG00000152061 E010 0.3635311 0.0167188739 7.656985e-01   1 174220712 174220971 260 + 0.154 0.108 -0.593
ENSG00000152061 E011 32.7069455 0.0011978007 1.134579e-02 8.739273e-02 1 174220972 174221164 193 + 1.580 1.448 -0.451
ENSG00000152061 E012 37.1236311 0.0003854673 5.690124e-01 8.061496e-01 1 174231145 174231355 211 + 1.589 1.566 -0.080
ENSG00000152061 E013 0.1265070 0.0123270175 4.079817e-01   1 174238822 174238949 128 + 0.000 0.108 12.299
ENSG00000152061 E014 29.2558613 0.0004550922 8.714842e-01 9.558819e-01 1 174241483 174241657 175 + 1.473 1.486 0.044
ENSG00000152061 E015 1.3238198 0.0095611590 2.784861e-01 5.717281e-01 1 174242982 174243179 198 + 0.431 0.266 -1.008
ENSG00000152061 E016 11.9708977 0.0220783894 7.341933e-03 6.519260e-02 1 174244298 174246346 2049 + 0.968 1.239 0.979
ENSG00000152061 E017 22.9629599 0.0007401699 9.932760e-04 1.492654e-02 1 174250475 174250632 158 + 1.457 1.253 -0.709
ENSG00000152061 E018 0.2435110 0.0164900674 8.324474e-01   1 174252444 174252479 36 + 0.084 0.108 0.407
ENSG00000152061 E019 22.6526423 0.0006949794 2.697074e-02 1.526219e-01 1 174252480 174252590 111 + 1.427 1.292 -0.468
ENSG00000152061 E020 19.3584148 0.0013956045 2.414222e-02 1.423528e-01 1 174272414 174272480 67 + 1.368 1.218 -0.526
ENSG00000152061 E021 0.0000000       1 174275100 174275189 90 +      
ENSG00000152061 E022 26.8397245 0.0005063482 1.906146e-01 4.698204e-01 1 174275833 174275935 103 + 1.473 1.402 -0.244
ENSG00000152061 E023 34.6824829 0.0004493077 5.281748e-01 7.800005e-01 1 174278613 174278779 167 + 1.562 1.535 -0.094
ENSG00000152061 E024 26.1081837 0.0005700959 6.315282e-01 8.419232e-01 1 174304986 174305127 142 + 1.416 1.448 0.109
ENSG00000152061 E025 0.1268540 0.0123476518 4.079865e-01   1 174365230 174365309 80 + 0.000 0.108 12.299
ENSG00000152061 E026 16.4607286 0.0008452177 2.533453e-02 1.464986e-01 1 174370979 174371072 94 + 1.304 1.145 -0.561
ENSG00000152061 E027 30.6762777 0.0045922736 7.526083e-02 2.800937e-01 1 174393995 174394145 151 + 1.542 1.439 -0.351
ENSG00000152061 E028 9.0434800 0.0089466941 5.115709e-01 7.687460e-01 1 174544844 174545911 1068 + 0.968 1.036 0.251
ENSG00000152061 E029 1.6320030 0.0083202547 2.254855e-03 2.798282e-02 1 174547837 174548561 725 + 0.154 0.613 2.866
ENSG00000152061 E030 9.6708777 0.0014716749 5.120896e-02 2.240896e-01 1 174637375 174637377 3 + 1.096 0.921 -0.647
ENSG00000152061 E031 29.5170708 0.0006303932 1.500442e-01 4.124821e-01 1 174637378 174637488 111 + 1.514 1.439 -0.258
ENSG00000152061 E032 27.1026449 0.0005718519 2.769953e-03 3.250536e-02 1 174683522 174683596 75 + 1.514 1.345 -0.583
ENSG00000152061 E033 34.2460229 0.0004551316 1.468423e-01 4.079032e-01 1 174699525 174699650 126 + 1.575 1.505 -0.238
ENSG00000152061 E034 0.0000000       1 174700413 174700524 112 +      
ENSG00000152061 E035 0.0000000       1 174700525 174700730 206 +      
ENSG00000152061 E036 0.0000000       1 174700731 174700746 16 +      
ENSG00000152061 E037 0.0000000       1 174700747 174700865 119 +      
ENSG00000152061 E038 0.0000000       1 174701020 174701021 2 +      
ENSG00000152061 E039 0.0000000       1 174701022 174701122 101 +      
ENSG00000152061 E040 0.0000000       1 174701123 174701145 23 +      
ENSG00000152061 E041 31.5626729 0.0005367837 9.078838e-02 3.129493e-01 1 174702113 174702256 144 + 1.466 1.559 0.317
ENSG00000152061 E042 0.8519726 0.0125277517 9.839513e-01 9.986907e-01 1 174705201 174705750 550 + 0.267 0.266 -0.008
ENSG00000152061 E043 15.5118492 0.0010027134 4.674654e-01 7.358107e-01 1 174752313 174752354 42 + 1.189 1.246 0.202
ENSG00000152061 E044 0.1265070 0.0123270175 4.079817e-01   1 174799932 174800500 569 + 0.000 0.108 12.299
ENSG00000152061 E045 36.4631929 0.0078832774 4.521153e-03 4.616230e-02 1 174811832 174811960 129 + 1.485 1.658 0.592
ENSG00000152061 E046 0.0000000       1 174874458 174874470 13 +      
ENSG00000152061 E047 0.1265070 0.0123270175 4.079817e-01   1 174874471 174874506 36 + 0.000 0.108 12.299
ENSG00000152061 E048 0.2459655 0.0164653245 8.325284e-01   1 174875546 174875713 168 + 0.084 0.108 0.407
ENSG00000152061 E049 0.7330423 0.4365484003 6.870614e-01 8.709215e-01 1 174877392 174877439 48 + 0.214 0.266 0.407
ENSG00000152061 E050 1.7324818 0.0880962870 1.816840e-01 4.577215e-01 1 174877440 174877605 166 + 0.315 0.549 1.254
ENSG00000152061 E051 37.5183536 0.0035931147 1.245222e-02 9.255758e-02 1 174957457 174957549 93 + 1.517 1.653 0.464
ENSG00000152061 E052 44.9800772 0.0003721368 9.601606e-01 9.908597e-01 1 174957891 174958173 283 + 1.657 1.664 0.022
ENSG00000152061 E053 2.2810862 0.0064342624 4.445399e-02 2.061595e-01 1 174958174 174958293 120 + 0.622 0.328 -1.500
ENSG00000152061 E054 0.3727544 0.0167023668 4.291042e-01   1 174964768 174964958 191 + 0.084 0.194 1.407
ENSG00000152061 E055 0.2541163 0.0160112556 1.625799e-01   1 174964959 174964985 27 + 0.000 0.194 13.240
ENSG00000152061 E056 2.3084978 0.0257970289 5.881045e-01 8.171847e-01 1 174969277 174969387 111 + 0.550 0.473 -0.371
ENSG00000152061 E057 0.1268540 0.0123476518 4.079865e-01   1 174976029 174976077 49 + 0.000 0.108 12.299
ENSG00000152061 E058 3.4517828 0.0694684415 2.138070e-01 4.991114e-01 1 174976078 174976182 105 + 0.551 0.741 0.821
ENSG00000152061 E059 2.3053755 0.0062462115 5.758961e-01 8.102355e-01 1 174978807 174978890 84 + 0.550 0.473 -0.371
ENSG00000152061 E060 2.1706540 0.0517153342 2.222738e-01 5.095904e-01 1 174982834 174982905 72 + 0.576 0.382 -0.972
ENSG00000152061 E061 4.4973181 0.0034547715 7.436390e-01 8.986056e-01 1 174988641 174988838 198 + 0.754 0.718 -0.146
ENSG00000152061 E062 70.7977927 0.0002227723 2.178467e-01 5.042908e-01 1 174989849 174993586 3738 + 1.832 1.879 0.158
ENSG00000152061 E063 55.7530771 0.0003282317 2.238991e-09 1.789003e-07 1 174993587 174995308 1722 + 1.628 1.868 0.811

Help

Please Click HERE to learn more details about the results from DEXseq.