ENSG00000153310

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000517654 ENSG00000153310 No_inf pgKDN_inf CYRIB protein_coding protein_coding 175.2916 129.4952 215.0404 2.347815 5.540427 0.7316644 43.555263 24.161506 54.12770 1.420069 4.049223 1.1633261 0.2426250 0.186575 0.251925 0.065350 0.380614662 0.003516439 FALSE  
ENST00000519110 ENSG00000153310 No_inf pgKDN_inf CYRIB protein_coding protein_coding 175.2916 129.4952 215.0404 2.347815 5.540427 0.7316644 42.209767 24.879007 48.95437 2.697915 3.108757 0.9762236 0.2375417 0.192650 0.228075 0.035425 0.799940695 0.003516439 FALSE  
ENST00000522250 ENSG00000153310 No_inf pgKDN_inf CYRIB protein_coding protein_coding 175.2916 129.4952 215.0404 2.347815 5.540427 0.7316644 2.896929 8.690786 0.00000 3.275284 0.000000 -9.7650020 0.0222250 0.066675 0.000000 -0.066675 0.003516439 0.003516439 FALSE  
MSTRG.28215.5 ENSG00000153310 No_inf pgKDN_inf CYRIB protein_coding   175.2916 129.4952 215.0404 2.347815 5.540427 0.7316644 64.796837 54.056740 85.53603 3.732606 3.670784 0.6619595 0.3722000 0.417125 0.398425 -0.018700 0.901822588 0.003516439 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000153310 E001 0.0000000       8 129839593 129839594 2 -      
ENSG00000153310 E002 42.1054189 0.0003625471 1.094501e-15 1.980900e-13 8 129839595 129841469 1875 - 1.432 1.808 1.280
ENSG00000153310 E003 4.1704118 0.0360279004 1.775139e-01 4.521600e-01 8 129841470 129841483 14 - 0.621 0.808 0.770
ENSG00000153310 E004 9.3272014 0.0367339194 5.692488e-02 2.383685e-01 8 129841484 129841496 13 - 0.901 1.126 0.829
ENSG00000153310 E005 8.9587227 0.0289626506 6.051829e-02 2.469308e-01 8 129841497 129841502 6 - 0.890 1.106 0.798
ENSG00000153310 E006 523.8563460 0.0002331837 7.958586e-03 6.892074e-02 8 129841503 129842079 577 - 2.698 2.735 0.124
ENSG00000153310 E007 208.7040284 0.0010184136 5.604536e-01 8.010151e-01 8 129842080 129842205 126 - 2.320 2.308 -0.039
ENSG00000153310 E008 117.1598021 0.0001577567 5.588310e-01 8.002917e-01 8 129846804 129846874 71 - 2.058 2.077 0.063
ENSG00000153310 E009 3.8389818 0.0258991445 1.104215e-02 8.576429e-02 8 129846875 129847317 443 - 0.503 0.847 1.462
ENSG00000153310 E010 176.0446336 0.0017255860 6.756335e-02 2.622310e-01 8 129849243 129849369 127 - 2.219 2.272 0.179
ENSG00000153310 E011 11.0786094 0.0013014769 1.531538e-03 2.080654e-02 8 129849370 129850553 1184 - 0.942 1.214 0.986
ENSG00000153310 E012 2.2149423 0.0061548800 1.862475e-01 4.640914e-01 8 129850554 129850834 281 - 0.413 0.603 0.921
ENSG00000153310 E013 145.6584825 0.0018190306 3.405561e-01 6.321419e-01 8 129850835 129850914 80 - 2.147 2.178 0.105
ENSG00000153310 E014 2.7567541 0.0054459875 6.833237e-05 1.720559e-03 8 129850915 129852161 1247 - 0.254 0.808 2.769
ENSG00000153310 E015 180.3089926 0.0001572643 2.294776e-01 5.180705e-01 8 129852162 129852278 117 - 2.262 2.237 -0.084
ENSG00000153310 E016 109.1291075 0.0001553116 8.255273e-01 9.368541e-01 8 129854266 129854343 78 - 2.037 2.033 -0.014
ENSG00000153310 E017 0.1272623 0.0123607831 3.521406e-01   8 129855583 129855610 28 - 0.000 0.114 9.738
ENSG00000153310 E018 88.6687479 0.0015020810 1.039065e-01 3.368670e-01 8 129855611 129855687 77 - 1.969 1.912 -0.190
ENSG00000153310 E019 49.3028965 0.0002932300 3.874820e-02 1.904583e-01 8 129855688 129855697 10 - 1.730 1.641 -0.301
ENSG00000153310 E020 94.2965057 0.0001694505 2.505202e-02 1.455987e-01 8 129855698 129855747 50 - 2.000 1.931 -0.231
ENSG00000153310 E021 66.7936276 0.0007742406 1.336996e-01 3.885987e-01 8 129862229 129862233 5 - 1.848 1.791 -0.190
ENSG00000153310 E022 74.4286617 0.0010462700 1.191759e-01 3.648257e-01 8 129862234 129862249 16 - 1.894 1.837 -0.191
ENSG00000153310 E023 94.0914160 0.0001834363 5.953699e-02 2.446715e-01 8 129862250 129862293 44 - 1.995 1.937 -0.194
ENSG00000153310 E024 68.4000676 0.0002598283 6.315185e-01 8.419232e-01 8 129862294 129862325 32 - 1.841 1.826 -0.052
ENSG00000153310 E025 53.9489380 0.0010317675 6.347585e-01 8.439141e-01 8 129862326 129862334 9 - 1.741 1.723 -0.062
ENSG00000153310 E026 58.8907531 0.0002569397 3.804877e-01 6.670098e-01 8 129871375 129871380 6 - 1.784 1.752 -0.111
ENSG00000153310 E027 81.5782735 0.0001906335 2.334859e-01 5.223939e-01 8 129871381 129871426 46 - 1.926 1.888 -0.129
ENSG00000153310 E028 54.9091954 0.0004789064 5.499022e-01 7.945782e-01 8 129871427 129871432 6 - 1.750 1.728 -0.077
ENSG00000153310 E029 90.8854727 0.0003249247 1.234607e-01 3.720168e-01 8 129871433 129871496 64 - 1.976 1.928 -0.161
ENSG00000153310 E030 75.1565180 0.0002109438 3.699009e-01 6.581630e-01 8 129879389 129879471 83 - 1.887 1.858 -0.099
ENSG00000153310 E031 1.3413128 0.0128375356 7.124749e-01 8.838534e-01 8 129879597 129879789 193 - 0.341 0.399 0.336
ENSG00000153310 E032 1.6939081 0.1555224020 8.333643e-01 9.399530e-01 8 129880376 129880458 83 - 0.445 0.399 -0.247
ENSG00000153310 E033 0.6007463 0.0151256507 3.560434e-01 6.458210e-01 8 129894487 129894564 78 - 0.254 0.114 -1.401
ENSG00000153310 E034 0.5964029 0.1631482393 4.202961e-01 6.997484e-01 8 129896672 129896748 77 - 0.254 0.114 -1.400
ENSG00000153310 E035 1.4487215 0.0281500077 6.515128e-01 8.532578e-01 8 129896749 129896854 106 - 0.413 0.343 -0.400
ENSG00000153310 E036 0.9965409 0.0808820985 6.502054e-02 2.568533e-01 8 129902961 129903311 351 - 0.145 0.448 2.185
ENSG00000153310 E037 52.4473426 0.0002822805 4.137314e-01 6.943494e-01 8 129903312 129903350 39 - 1.735 1.702 -0.109
ENSG00000153310 E038 29.0779076 0.0004793495 1.220534e-01 3.695715e-01 8 129904499 129904585 87 - 1.505 1.420 -0.294
ENSG00000153310 E039 0.8456393 0.0131495645 5.365012e-01 7.857826e-01 8 129912360 129912417 58 - 0.300 0.205 -0.723
ENSG00000153310 E040 0.6079860 0.0242338657 9.963103e-01 1.000000e+00 8 129912470 129912515 46 - 0.203 0.205 0.014
ENSG00000153310 E041 6.3578063 0.0245608114 2.800166e-01 5.732772e-01 8 129939608 129939872 265 - 0.804 0.931 0.488
ENSG00000153310 E042 0.4986009 0.0355979183 1.648593e-01   8 129948966 129949067 102 - 0.079 0.280 2.184
ENSG00000153310 E043 1.1165922 0.0305922097 1.177445e-01 3.624946e-01 8 129970509 129970675 167 - 0.203 0.448 1.599
ENSG00000153310 E044 2.5842696 0.0054677225 1.160597e-01 3.592109e-01 8 129970676 129970942 267 - 0.446 0.664 1.014
ENSG00000153310 E045 29.4223976 0.0004628157 6.744082e-02 2.619817e-01 8 129970943 129970995 53 - 1.516 1.415 -0.348
ENSG00000153310 E046 1.2516625 0.0539348306 1.525189e-02 1.063471e-01 8 130002336 130002433 98 - 0.145 0.533 2.599
ENSG00000153310 E047 30.4777505 0.0004467730 1.658501e-02 1.121625e-01 8 130016370 130016606 237 - 1.542 1.410 -0.453
ENSG00000153310 E048 1.4515479 0.0101313530 6.440944e-01 8.492330e-01 8 130016607 130016727 121 - 0.413 0.343 -0.401
ENSG00000153310 E049 0.0000000       8 130017018 130017122 105 -      
ENSG00000153310 E050 0.0000000       8 130017123 130017504 382 -      

Help

Please Click HERE to learn more details about the results from DEXseq.