ENSG00000153560

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000283629 ENSG00000153560 No_inf pgKDN_inf UBP1 protein_coding protein_coding 47.72453 41.48848 52.69283 1.481048 0.8680939 0.3448219 7.516934 4.923408 10.650615 0.9087747 0.6019874 1.1116340 0.15660000 0.121050 0.202650 0.081600 0.48540669 0.02305955 FALSE  
ENST00000467613 ENSG00000153560 No_inf pgKDN_inf UBP1 protein_coding protein_coding_CDS_not_defined 47.72453 41.48848 52.69283 1.481048 0.8680939 0.3448219 2.438935 3.503862 0.000000 1.6065716 0.0000000 -8.4569136 0.05120833 0.080825 0.000000 -0.080825 0.02305955 0.02305955 FALSE  
MSTRG.19896.3 ENSG00000153560 No_inf pgKDN_inf UBP1 protein_coding   47.72453 41.48848 52.69283 1.481048 0.8680939 0.3448219 28.927427 28.300827 32.399504 1.7647454 1.4481225 0.1950630 0.61213333 0.682400 0.614775 -0.067625 0.72254136 0.02305955 FALSE  
MSTRG.19896.5 ENSG00000153560 No_inf pgKDN_inf UBP1 protein_coding   47.72453 41.48848 52.69283 1.481048 0.8680939 0.3448219 3.603599 1.383332 1.974307 1.3833318 1.1963192 0.5100961 0.07277500 0.033750 0.037175 0.003425 0.83174946 0.02305955 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000153560 E001 0.4909842 0.4581331596 9.009567e-01   3 33388336 33388337 2 - 0.162 0.185 0.225
ENSG00000153560 E002 0.4909842 0.4581331596 9.009567e-01   3 33388338 33388338 1 - 0.162 0.185 0.225
ENSG00000153560 E003 0.4909842 0.4581331596 9.009567e-01   3 33388339 33388350 12 - 0.162 0.185 0.225
ENSG00000153560 E004 1.8509649 0.0074866550 2.864790e-01 0.5800471163 3 33388351 33388375 25 - 0.372 0.529 0.812
ENSG00000153560 E005 457.0513346 0.0003453978 5.930650e-02 0.2443386005 3 33388376 33390096 1721 - 2.649 2.672 0.076
ENSG00000153560 E006 20.8404776 0.0048221385 4.997420e-01 0.7599268070 3 33390097 33390133 37 - 1.361 1.314 -0.163
ENSG00000153560 E007 36.1086998 0.0003994005 6.053256e-01 0.8279896044 3 33390134 33390265 132 - 1.581 1.556 -0.086
ENSG00000153560 E008 34.4672490 0.0013341735 4.221930e-02 0.2000224659 3 33390266 33390368 103 - 1.496 1.601 0.361
ENSG00000153560 E009 18.5685416 0.0009593494 5.859150e-06 0.0002154106 3 33390369 33392362 1994 - 1.114 1.426 1.099
ENSG00000153560 E010 2.7022123 0.0050724080 4.328686e-01 0.7103490733 3 33392363 33392562 200 - 0.514 0.621 0.490
ENSG00000153560 E011 23.6900958 0.0005911121 9.528526e-01 0.9883483998 3 33392563 33392614 52 - 1.394 1.390 -0.012
ENSG00000153560 E012 5.5253246 0.1110944280 6.542602e-01 0.8548744870 3 33392615 33393311 697 - 0.760 0.867 0.419
ENSG00000153560 E013 39.9428569 0.0003594447 2.922368e-03 0.0338447479 3 33393312 33393454 143 - 1.674 1.533 -0.480
ENSG00000153560 E014 22.7032633 0.0006981953 8.009764e-01 0.9257244834 3 33396162 33396242 81 - 1.382 1.366 -0.053
ENSG00000153560 E015 18.9655348 0.0007512374 5.687383e-01 0.8060140322 3 33396243 33396280 38 - 1.281 1.319 0.134
ENSG00000153560 E016 4.0568676 0.0042352240 3.383808e-01 0.6301440695 3 33396281 33396581 301 - 0.643 0.761 0.490
ENSG00000153560 E017 2.3210211 0.0059251944 9.122020e-01 0.9720228924 3 33396582 33396744 163 - 0.514 0.529 0.075
ENSG00000153560 E018 3.6393339 0.0039496645 3.028359e-01 0.5959469805 3 33396745 33396878 134 - 0.724 0.592 -0.562
ENSG00000153560 E019 2.0947632 0.0100594744 3.024732e-01 0.5955386899 3 33396879 33397044 166 - 0.412 0.562 0.741
ENSG00000153560 E020 31.3925308 0.0005445214 9.446104e-01 0.9846469058 3 33397045 33397135 91 - 1.508 1.512 0.013
ENSG00000153560 E021 0.9886129 0.1722323122 4.396335e-01 0.7155503273 3 33397136 33398438 1303 - 0.225 0.366 0.963
ENSG00000153560 E022 32.7514314 0.0011520156 2.816866e-01 0.5750068918 3 33400189 33400282 94 - 1.554 1.498 -0.194
ENSG00000153560 E023 30.2486124 0.0005126777 6.748369e-01 0.8652808511 3 33400962 33401016 55 - 1.505 1.483 -0.077
ENSG00000153560 E024 46.0556654 0.0107761720 9.710381e-01 0.9943226550 3 33402801 33402904 104 - 1.672 1.673 0.004
ENSG00000153560 E025 14.6573423 0.0017268938 9.554310e-01 0.9892345488 3 33408690 33408797 108 - 1.196 1.192 -0.014
ENSG00000153560 E026 33.0682670 0.0004668363 2.439362e-01 0.5339469901 3 33409236 33409284 49 - 1.502 1.562 0.206
ENSG00000153560 E027 34.1509215 0.0071598705 3.911504e-01 0.6763721721 3 33409285 33409346 62 - 1.520 1.571 0.175
ENSG00000153560 E028 35.1623700 0.0113319732 9.986436e-01 1.0000000000 3 33409449 33409587 139 - 1.557 1.559 0.006
ENSG00000153560 E029 13.8785083 0.0209179725 5.810181e-01 0.8132919323 3 33409588 33409601 14 - 1.196 1.145 -0.180
ENSG00000153560 E030 33.6467812 0.0004344077 5.290682e-01 0.7804912943 3 33411581 33411687 107 - 1.554 1.523 -0.109
ENSG00000153560 E031 15.1735755 0.0091153231 1.213580e-01 0.3687567537 3 33412722 33412725 4 - 1.265 1.137 -0.455
ENSG00000153560 E032 33.1316532 0.0114177014 5.234296e-01 0.7767095791 3 33412726 33412827 102 - 1.554 1.508 -0.157
ENSG00000153560 E033 0.7270387 0.0141043041 5.299929e-01 0.7812177321 3 33416006 33416100 95 - 0.280 0.185 -0.773
ENSG00000153560 E034 17.7895794 0.0059369184 6.250673e-01 0.8386201336 3 33416758 33416792 35 - 1.291 1.254 -0.130
ENSG00000153560 E035 17.3395051 0.0059461451 9.540362e-01 0.9886731754 3 33416793 33416834 42 - 1.265 1.260 -0.018
ENSG00000153560 E036 26.8515509 0.0006397802 3.221452e-02 0.1697986101 3 33425590 33425741 152 - 1.499 1.376 -0.424
ENSG00000153560 E037 16.2513378 0.0104190317 3.529072e-02 0.1798211577 3 33439736 33439856 121 - 1.311 1.137 -0.614
ENSG00000153560 E038 7.7977262 0.0018754228 5.344791e-01 0.7845039403 3 33439857 33439925 69 - 0.972 0.911 -0.228
ENSG00000153560 E039 14.9953345 0.0124679212 1.784688e-02 0.1176428454 3 33439926 33440333 408 - 1.291 1.084 -0.738
ENSG00000153560 E040 0.6168623 0.3708095323 7.430984e-01 0.8983949415 3 33440334 33440458 125 - 0.162 0.254 0.810
ENSG00000153560 E041 0.0000000       3 33440459 33440587 129 -      
ENSG00000153560 E042 0.2363338 0.0156706977 3.006911e-01   3 33440677 33440923 247 - 0.162 0.000 -10.284
ENSG00000153560 E043 0.4896974 0.0156773915 8.760936e-01   3 33441269 33441371 103 - 0.162 0.185 0.227

Help

Please Click HERE to learn more details about the results from DEXseq.