ENSG00000155097

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000518738 ENSG00000155097 No_inf pgKDN_inf ATP6V1C1 protein_coding protein_coding 38.31648 20.54177 47.7681 1.871178 1.049306 1.217087 18.27116 15.963349 20.64114 0.1730881 0.5545251 0.3705546 0.5425000 0.796750 0.433425 -0.363325 0.01398022 0.01398022 FALSE TRUE
ENST00000521671 ENSG00000155097 No_inf pgKDN_inf ATP6V1C1 protein_coding retained_intron 38.31648 20.54177 47.7681 1.871178 1.049306 1.217087 19.74961 4.419808 26.81328 2.0305245 1.7004444 2.5981693 0.4487333 0.193575 0.559875 0.366300 0.08829043 0.01398022 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000155097 E001 0.3526461 2.516869e-02 1.585208e-01   8 103021063 103021082 20 + 0.218 0.000 -10.390
ENSG00000155097 E002 0.6066364 1.958589e-02 8.533516e-01 9.482583e-01 8 103021083 103021087 5 + 0.218 0.190 -0.249
ENSG00000155097 E003 6.8223078 2.088498e-03 8.438182e-01 9.441532e-01 8 103021088 103021182 95 + 0.902 0.881 -0.079
ENSG00000155097 E004 1.9463203 2.631928e-01 8.511959e-01 9.472841e-01 8 103021183 103021225 43 + 0.503 0.423 -0.404
ENSG00000155097 E005 40.4102731 4.674187e-04 1.775763e-02 1.172475e-01 8 103040798 103040968 171 + 1.664 1.552 -0.380
ENSG00000155097 E006 31.0515726 1.199790e-03 4.472012e-02 2.067668e-01 8 103042340 103042407 68 + 1.552 1.442 -0.377
ENSG00000155097 E007 34.8664341 1.053779e-03 1.216127e-03 1.739804e-02 8 103048870 103048955 86 + 1.623 1.455 -0.574
ENSG00000155097 E008 29.5850487 7.152540e-04 1.448407e-02 1.026388e-01 8 103051050 103051116 67 + 1.541 1.406 -0.464
ENSG00000155097 E009 18.9641002 1.613422e-02 3.454141e-01 6.364294e-01 8 103051117 103051144 28 + 1.332 1.256 -0.265
ENSG00000155097 E010 32.5429774 4.563165e-04 5.452504e-02 2.325691e-01 8 103052731 103052822 92 + 1.568 1.467 -0.344
ENSG00000155097 E011 28.4730696 5.754239e-04 3.597173e-03 3.949714e-02 8 103053884 103053982 99 + 1.536 1.372 -0.564
ENSG00000155097 E012 26.7546604 6.035198e-04 2.086421e-01 4.926841e-01 8 103055868 103055936 69 + 1.474 1.401 -0.249
ENSG00000155097 E013 33.2058808 4.282328e-04 2.889419e-01 5.825281e-01 8 103062955 103063047 93 + 1.557 1.502 -0.187
ENSG00000155097 E014 30.4311234 5.349523e-04 5.700452e-01 8.068235e-01 8 103063135 103063228 94 + 1.510 1.479 -0.106
ENSG00000155097 E015 0.1272623 1.238510e-02 4.248114e-01   8 103063229 103063270 42 + 0.000 0.106 10.443
ENSG00000155097 E016 0.2441403 1.648134e-02 8.556370e-01   8 103064560 103064713 154 + 0.086 0.106 0.336
ENSG00000155097 E017 35.2173161 5.590110e-04 9.384907e-01 9.822325e-01 8 103064714 103064811 98 + 1.560 1.555 -0.015
ENSG00000155097 E018 41.8910832 3.576941e-04 5.106576e-01 7.680799e-01 8 103066321 103066447 127 + 1.645 1.614 -0.103
ENSG00000155097 E019 303.2354210 9.538889e-05 4.624296e-17 9.592568e-15 8 103068652 103073051 4400 + 2.427 2.538 0.370

Help

Please Click HERE to learn more details about the results from DEXseq.