ENSG00000155111

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000323817 ENSG00000155111 No_inf pgKDN_inf CDK19 protein_coding protein_coding 26.69766 32.2557 25.63655 0.5002982 0.5879657 -0.3312364 6.081592 3.882521 9.510963 1.4894907 1.722488 1.2904028 0.23985000 0.118750 0.373725 0.254975 0.29907965 0.03035403 FALSE TRUE
ENST00000368911 ENSG00000155111 No_inf pgKDN_inf CDK19 protein_coding protein_coding 26.69766 32.2557 25.63655 0.5002982 0.5879657 -0.3312364 2.699752 2.480177 2.756375 0.5803682 1.217078 0.1517486 0.10282500 0.076925 0.106725 0.029800 1.00000000 0.03035403 FALSE TRUE
MSTRG.25149.1 ENSG00000155111 No_inf pgKDN_inf CDK19 protein_coding   26.69766 32.2557 25.63655 0.5002982 0.5879657 -0.3312364 12.890946 20.681793 9.544060 0.8891941 1.463286 -1.1148728 0.46354167 0.640450 0.371225 -0.269225 0.03035403 0.03035403 FALSE TRUE
MSTRG.25149.5 ENSG00000155111 No_inf pgKDN_inf CDK19 protein_coding   26.69766 32.2557 25.63655 0.5002982 0.5879657 -0.3312364 1.828698 3.948347 0.000000 2.3394971 0.000000 -8.6287543 0.06658333 0.125000 0.000000 -0.125000 0.54586611 0.03035403 FALSE TRUE
MSTRG.25149.6 ENSG00000155111 No_inf pgKDN_inf CDK19 protein_coding   26.69766 32.2557 25.63655 0.5002982 0.5879657 -0.3312364 0.896685 0.000000 1.873747 0.0000000 0.772772 7.5574611 0.03699167 0.000000 0.072600 0.072600 0.03460929 0.03035403 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000155111 E001 1.0163392 8.337398e-02 1.068899e-02 8.390332e-02 6 110609978 110609999 22 - 0.000 0.431 11.731
ENSG00000155111 E002 1.3965542 1.287020e-02 1.148716e-03 1.666798e-02 6 110610000 110610003 4 - 0.000 0.523 13.899
ENSG00000155111 E003 715.7997075 9.872243e-05 1.170992e-14 1.943270e-12 6 110610004 110614666 4663 - 2.825 2.864 0.130
ENSG00000155111 E004 19.6461848 6.785068e-03 4.361429e-01 7.125573e-01 6 110621104 110621370 267 - 1.340 1.285 -0.193
ENSG00000155111 E005 3.4366101 5.131365e-03 7.105369e-01 8.829772e-01 6 110622088 110622095 8 - 0.669 0.622 -0.203
ENSG00000155111 E006 7.8676502 5.798136e-03 8.967586e-01 9.659631e-01 6 110622096 110622166 71 - 0.949 0.937 -0.047
ENSG00000155111 E007 10.3313771 5.175339e-02 9.431918e-01 9.842133e-01 6 110622815 110622912 98 - 1.047 1.049 0.006
ENSG00000155111 E008 10.5121071 1.260287e-02 1.757031e-01 4.498492e-01 6 110623290 110623362 73 - 1.127 0.997 -0.476
ENSG00000155111 E009 0.3709943 1.659783e-02 7.764781e-01   6 110623363 110623409 47 - 0.108 0.154 0.591
ENSG00000155111 E010 11.1996481 4.963416e-02 8.716035e-02 3.059696e-01 6 110626776 110626845 70 - 1.195 0.978 -0.786
ENSG00000155111 E011 14.6297466 9.381740e-04 4.650813e-03 4.699962e-02 6 110627002 110627145 144 - 1.299 1.088 -0.748
ENSG00000155111 E012 11.5173405 1.204494e-03 2.421980e-01 5.318923e-01 6 110632030 110632161 132 - 1.145 1.049 -0.348
ENSG00000155111 E013 7.8880686 1.889548e-03 2.828449e-03 3.304800e-02 6 110638649 110638706 58 - 1.089 0.800 -1.088
ENSG00000155111 E014 13.3999794 1.689025e-02 1.102097e-02 8.564916e-02 6 110667434 110667574 141 - 1.273 1.041 -0.832
ENSG00000155111 E015 12.8568226 1.080296e-03 6.897769e-05 1.733571e-03 6 110670431 110670541 111 - 1.293 0.978 -1.132
ENSG00000155111 E016 9.5663092 1.509787e-03 1.249119e-04 2.845016e-03 6 110746126 110746201 76 - 1.187 0.842 -1.275
ENSG00000155111 E017 0.3810317 2.808576e-02 1.735001e-01   6 110746202 110746266 65 - 0.000 0.214 12.037
ENSG00000155111 E018 2.6340120 5.396930e-03 2.082685e-04 4.328614e-03 6 110773876 110773937 62 - 0.784 0.267 -2.579
ENSG00000155111 E019 5.5327971 7.473382e-03 8.386904e-01 9.421068e-01 6 110813159 110814124 966 - 0.822 0.800 -0.088
ENSG00000155111 E020 7.2625017 3.811488e-03 7.740175e-04 1.231440e-02 6 110815009 110815469 461 - 1.079 0.737 -1.302
ENSG00000155111 E021 0.4998907 1.525087e-02 4.760837e-01 7.427137e-01 6 110815571 110815637 67 - 0.108 0.214 1.175
ENSG00000155111 E022 0.2543986 1.604195e-02 3.572044e-01   6 110815808 110815958 151 - 0.000 0.154 11.547

Help

Please Click HERE to learn more details about the results from DEXseq.