ENSG00000155256

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000359980 ENSG00000155256 No_inf pgKDN_inf ZFYVE27 protein_coding protein_coding 13.4368 14.77054 11.00142 0.4232104 0.5323351 -0.4246986 1.7718795 1.0815202 4.234118 1.0815202 1.4655742 1.9591261 0.1491667 0.074275 0.373225 0.29895 0.21536096 0.00101955 FALSE TRUE
ENST00000370613 ENSG00000155256 No_inf pgKDN_inf ZFYVE27 protein_coding protein_coding 13.4368 14.77054 11.00142 0.4232104 0.5323351 -0.4246986 0.5393704 0.4922795 1.125832 0.4922795 0.6634527 1.1771870 0.0446500 0.033750 0.100200 0.06645 0.78109178 0.00101955 FALSE TRUE
ENST00000473237 ENSG00000155256 No_inf pgKDN_inf ZFYVE27 protein_coding protein_coding_CDS_not_defined 13.4368 14.77054 11.00142 0.4232104 0.5323351 -0.4246986 2.0863182 3.5163775 1.093864 0.6072216 0.6985926 -1.6756249 0.1434750 0.235575 0.091175 -0.14440 0.44719384 0.00101955   FALSE
ENST00000477521 ENSG00000155256 No_inf pgKDN_inf ZFYVE27 protein_coding protein_coding_CDS_not_defined 13.4368 14.77054 11.00142 0.4232104 0.5323351 -0.4246986 1.0968376 2.8069416 0.000000 0.8010667 0.0000000 -8.1379859 0.0733000 0.187100 0.000000 -0.18710 0.00101955 0.00101955   FALSE
MSTRG.3853.8 ENSG00000155256 No_inf pgKDN_inf ZFYVE27 protein_coding   13.4368 14.77054 11.00142 0.4232104 0.5323351 -0.4246986 3.9887307 5.2686942 3.740432 1.1030764 1.9656574 -0.4931242 0.3011667 0.356725 0.357825 0.00110 0.92153631 0.00101955 FALSE TRUE
MSTRG.3853.9 ENSG00000155256 No_inf pgKDN_inf ZFYVE27 protein_coding   13.4368 14.77054 11.00142 0.4232104 0.5323351 -0.4246986 1.6971018 0.0000000 0.000000 0.0000000 0.0000000 0.0000000 0.1196750 0.000000 0.000000 0.00000   0.00101955 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000155256 E001 0.0000000       10 97737121 97737122 2 +      
ENSG00000155256 E002 0.0000000       10 97737123 97737127 5 +      
ENSG00000155256 E003 0.0000000       10 97737128 97737134 7 +      
ENSG00000155256 E004 0.1265070 0.012455168 0.599439407   10 97737135 97737139 5 + 0.000 0.091 8.947
ENSG00000155256 E005 0.9821562 0.167517955 0.913198200 0.97247122 10 97737140 97737182 43 + 0.308 0.285 -0.158
ENSG00000155256 E006 7.6371722 0.002028983 0.398200098 0.68229710 10 97737183 97737321 139 + 0.888 0.971 0.313
ENSG00000155256 E007 0.9783811 0.012474109 0.877723203 0.95849528 10 97737322 97737325 4 + 0.308 0.285 -0.157
ENSG00000155256 E008 9.6799768 0.001529315 0.699261796 0.87744984 10 97738477 97738649 173 + 1.044 1.012 -0.120
ENSG00000155256 E009 3.5469467 0.004164393 0.629324551 0.84097672 10 97738650 97738674 25 + 0.688 0.628 -0.256
ENSG00000155256 E010 0.1170040 0.011833131 0.481824319   10 97738675 97738845 171 + 0.100 0.000 -11.949
ENSG00000155256 E011 4.1196522 0.003894569 0.041353272 0.19745440 10 97743094 97743164 71 + 0.825 0.578 -1.031
ENSG00000155256 E012 10.8750475 0.001411568 0.197426426 0.47871172 10 97744729 97744915 187 + 1.127 1.021 -0.384
ENSG00000155256 E013 7.3558631 0.009265813 0.860359722 0.95157920 10 97748269 97748364 96 + 0.929 0.913 -0.060
ENSG00000155256 E014 6.0024402 0.003021830 0.805237637 0.92790367 10 97749474 97749586 113 + 0.857 0.832 -0.098
ENSG00000155256 E015 0.2448930 0.016302638 0.931214613   10 97750033 97750330 298 + 0.100 0.091 -0.157
ENSG00000155256 E016 7.8483256 0.002007928 0.846681006 0.94561913 10 97750331 97750470 140 + 0.955 0.937 -0.067
ENSG00000155256 E017 1.6055952 0.009167881 0.528430430 0.78019071 10 97751376 97751390 15 + 0.360 0.456 0.521
ENSG00000155256 E018 6.5024423 0.006873687 0.993348274 1.00000000 10 97751391 97751462 72 + 0.873 0.875 0.007
ENSG00000155256 E019 0.2537079 0.218149592 0.330899484   10 97752857 97752877 21 + 0.000 0.165 11.511
ENSG00000155256 E020 10.6686129 0.001375630 0.843659799 0.94414748 10 97753038 97753182 145 + 1.074 1.058 -0.057
ENSG00000155256 E021 1.3851290 0.011172043 0.006484494 0.05966133 10 97757203 97757264 62 + 0.100 0.521 3.165
ENSG00000155256 E022 6.0113793 0.005264946 0.966504917 0.99322592 10 97757265 97757311 47 + 0.842 0.847 0.020
ENSG00000155256 E023 6.8200153 0.023686960 0.189032429 0.46763026 10 97757642 97757723 82 + 0.967 0.817 -0.572
ENSG00000155256 E024 2.6218126 0.006330834 0.027986324 0.15627026 10 97757868 97758171 304 + 0.360 0.673 1.521
ENSG00000155256 E025 82.0753562 0.000265854 0.319370539 0.61209377 10 97759236 97760907 1672 + 1.904 1.929 0.086

Help

Please Click HERE to learn more details about the results from DEXseq.