ENSG00000155463

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000285848 ENSG00000155463 No_inf pgKDN_inf OXA1L protein_coding protein_coding 101.6861 109.8869 99.92037 2.336024 3.762141 -0.1371559 4.323633 1.836035 7.979536 1.439797 2.314759 2.11368161 0.0426250 0.016775 0.078500 0.061725 0.193302487 0.002628796 FALSE TRUE
ENST00000431881 ENSG00000155463 No_inf pgKDN_inf OXA1L protein_coding protein_coding 101.6861 109.8869 99.92037 2.336024 3.762141 -0.1371559 13.468415 13.492056 11.369216 4.632914 4.341319 -0.24677801 0.1350750 0.122725 0.118775 -0.003950 1.000000000 0.002628796 FALSE FALSE
ENST00000442110 ENSG00000155463 No_inf pgKDN_inf OXA1L protein_coding nonsense_mediated_decay 101.6861 109.8869 99.92037 2.336024 3.762141 -0.1371559 14.173727 17.289785 13.341016 5.229178 5.799497 -0.37380454 0.1367667 0.158175 0.129200 -0.028975 0.861435144 0.002628796 FALSE FALSE
ENST00000473744 ENSG00000155463 No_inf pgKDN_inf OXA1L protein_coding retained_intron 101.6861 109.8869 99.92037 2.336024 3.762141 -0.1371559 17.597688 19.097218 20.083753 4.805417 4.286495 0.07262928 0.1711583 0.171525 0.197650 0.026125 0.902190112 0.002628796 FALSE TRUE
ENST00000612549 ENSG00000155463 No_inf pgKDN_inf OXA1L protein_coding protein_coding 101.6861 109.8869 99.92037 2.336024 3.762141 -0.1371559 33.698242 27.526017 37.313238 2.822202 0.679671 0.43875428 0.3358083 0.249775 0.375850 0.126075 0.116501686 0.002628796 FALSE TRUE
MSTRG.8267.8 ENSG00000155463 No_inf pgKDN_inf OXA1L protein_coding   101.6861 109.8869 99.92037 2.336024 3.762141 -0.1371559 9.809126 19.842936 1.467026 2.156641 1.467026 -3.74858500 0.0943000 0.181950 0.016225 -0.165725 0.002628796 0.002628796 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000155463 E001 0.2441403 0.0164421764 8.653906e-01   14 22766522 22766674 153 + 0.105 0.086 -0.315
ENSG00000155463 E002 0.4884066 0.0784002139 8.406326e-01   14 22766675 22766687 13 + 0.189 0.158 -0.315
ENSG00000155463 E003 0.4884066 0.0784002139 8.406326e-01   14 22766688 22766689 2 + 0.189 0.158 -0.315
ENSG00000155463 E004 0.6152606 0.0216643185 8.380824e-01 9.420044e-01 14 22766690 22766691 2 + 0.189 0.220 0.270
ENSG00000155463 E005 7.1967709 0.0074096823 1.558574e-01 4.219038e-01 14 22766692 22766701 10 + 0.988 0.840 -0.560
ENSG00000155463 E006 7.3145276 0.0066611085 1.207980e-01 3.676703e-01 14 22766702 22766702 1 + 1.000 0.840 -0.605
ENSG00000155463 E007 25.6249725 0.0054703618 4.000263e-01 6.836253e-01 14 22766703 22766718 16 + 1.452 1.397 -0.191
ENSG00000155463 E008 49.7148687 0.0004478186 4.498023e-01 7.233693e-01 14 22766719 22766764 46 + 1.719 1.687 -0.108
ENSG00000155463 E009 3.5928285 0.0039320192 2.767165e-01 5.701383e-01 14 22766765 22766914 150 + 0.572 0.713 0.611
ENSG00000155463 E010 1.4790594 0.0111276844 8.443633e-01 9.444583e-01 14 22766915 22766924 10 + 0.374 0.404 0.170
ENSG00000155463 E011 2.4503618 0.0109714029 6.309962e-01 8.417005e-01 14 22766925 22767051 127 + 0.572 0.504 -0.315
ENSG00000155463 E012 60.2318013 0.0002818828 2.258543e-01 5.137590e-01 14 22767248 22767281 34 + 1.808 1.762 -0.156
ENSG00000155463 E013 38.2851089 0.0003479187 5.274154e-01 7.794198e-01 14 22767282 22767317 36 + 1.572 1.603 0.105
ENSG00000155463 E014 69.8376865 0.0002420431 2.150963e-02 1.328386e-01 14 22767318 22767409 92 + 1.891 1.809 -0.275
ENSG00000155463 E015 3.4491063 0.0051200746 8.598640e-01 9.513787e-01 14 22767410 22767708 299 + 0.631 0.654 0.100
ENSG00000155463 E016 119.5758183 0.0001460866 3.054264e-02 1.644327e-01 14 22767958 22768171 214 + 2.109 2.051 -0.194
ENSG00000155463 E017 17.8204856 0.0068420241 2.948491e-02 1.613675e-01 14 22768172 22768929 758 + 1.166 1.335 0.596
ENSG00000155463 E018 34.2809317 0.0004079235 1.523430e-01 4.162766e-01 14 22769791 22769796 6 + 1.499 1.573 0.252
ENSG00000155463 E019 115.3262480 0.0001473003 7.964465e-02 2.895773e-01 14 22769797 22769934 138 + 2.032 2.081 0.164
ENSG00000155463 E020 105.6131689 0.0010871684 9.170400e-01 9.739400e-01 14 22770193 22770278 86 + 2.021 2.025 0.012
ENSG00000155463 E021 44.2574539 0.0003349243 6.565075e-14 1.000228e-11 14 22770279 22770460 182 + 1.408 1.772 1.243
ENSG00000155463 E022 155.4334498 0.0001214409 2.995320e-01 5.924511e-01 14 22770461 22770625 165 + 2.176 2.200 0.082
ENSG00000155463 E023 134.2100768 0.0001355860 2.545279e-01 5.462678e-01 14 22770805 22770909 105 + 2.143 2.114 -0.096
ENSG00000155463 E024 154.6557148 0.0001133194 9.696566e-01 9.937648e-01 14 22771018 22771180 163 + 2.188 2.187 -0.002
ENSG00000155463 E025 99.6348358 0.0001635714 5.267644e-01 7.789720e-01 14 22771268 22771348 81 + 2.009 1.990 -0.062
ENSG00000155463 E026 180.9271908 0.0001006947 2.721013e-01 5.659023e-01 14 22771434 22773042 1609 + 2.268 2.245 -0.078

Help

Please Click HERE to learn more details about the results from DEXseq.