ENSG00000155849

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000396040 ENSG00000155849 No_inf pgKDN_inf ELMO1 protein_coding protein_coding 22.63855 38.58947 15.77174 2.062655 0.5213132 -1.290324 4.078865 10.928476 0.1433439 2.2490219 0.1433439 -6.1564973 0.1246500 0.279000 0.00900 -0.270000 5.215764e-06 5.215764e-06 FALSE TRUE
ENST00000448602 ENSG00000155849 No_inf pgKDN_inf ELMO1 protein_coding protein_coding 22.63855 38.58947 15.77174 2.062655 0.5213132 -1.290324 3.046643 2.463309 3.9140395 0.3466874 0.5985906 0.6658971 0.1729250 0.064075 0.24915 0.185075 2.709256e-02 5.215764e-06 FALSE TRUE
MSTRG.26070.2 ENSG00000155849 No_inf pgKDN_inf ELMO1 protein_coding   22.63855 38.58947 15.77174 2.062655 0.5213132 -1.290324 4.050743 8.549714 3.3921788 1.8855258 1.1712976 -1.3311037 0.1512833 0.229625 0.20970 -0.019925 9.512367e-01 5.215764e-06 FALSE TRUE
MSTRG.26070.4 ENSG00000155849 No_inf pgKDN_inf ELMO1 protein_coding   22.63855 38.58947 15.77174 2.062655 0.5213132 -1.290324 7.004430 7.952975 6.1434123 3.0550659 0.5017272 -0.3719209 0.3711333 0.202900 0.39310 0.190200 5.995900e-01 5.215764e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000155849 E001 0.5074127 0.0162343560 0.2536567414 0.545200761 7 36852906 36854360 1455 - 0.000 0.210 10.562
ENSG00000155849 E002 4.6351310 0.0039132596 0.1476061851 0.409008850 7 36854361 36854461 101 - 0.567 0.754 0.796
ENSG00000155849 E003 94.4213468 0.0001880825 0.0360037344 0.182057511 7 36854462 36855290 829 - 1.892 1.944 0.177
ENSG00000155849 E004 14.6218281 0.0014284110 0.0791355608 0.288443423 7 36855291 36855366 76 - 1.041 1.181 0.504
ENSG00000155849 E005 23.7674883 0.0006065565 0.0046216367 0.046823022 7 36855367 36855497 131 - 1.204 1.390 0.649
ENSG00000155849 E006 15.4576768 0.0316471204 0.3185856381 0.611261732 7 36855498 36855550 53 - 1.098 1.194 0.345
ENSG00000155849 E007 30.3005692 0.0004988908 0.0926926577 0.316205458 7 36855551 36855751 201 - 1.382 1.470 0.305
ENSG00000155849 E008 14.5976194 0.0009418331 0.1832722615 0.460031225 7 36861659 36861736 78 - 1.071 1.172 0.365
ENSG00000155849 E009 1.2595622 0.0124866881 0.1448389928 0.405131534 7 36861737 36862150 414 - 0.141 0.381 1.866
ENSG00000155849 E010 14.9712949 0.0009552115 0.1978475888 0.479271237 7 36870393 36870475 83 - 1.085 1.181 0.346
ENSG00000155849 E011 0.1265070 0.0122473377 1.0000000000   7 36872207 36872256 50 - 0.000 0.063 11.019
ENSG00000155849 E012 16.9824470 0.0036006752 0.1344915484 0.389898257 7 36878010 36878117 108 - 1.124 1.236 0.397
ENSG00000155849 E013 16.4988218 0.0013501021 0.0530018631 0.228944617 7 36887560 36887672 113 - 1.085 1.232 0.525
ENSG00000155849 E014 12.8838742 0.0011204483 0.0368117016 0.184741844 7 36894854 36894921 68 - 0.958 1.139 0.662
ENSG00000155849 E015 10.2438377 0.0019053702 0.1292669498 0.381414939 7 36894922 36895008 87 - 0.899 1.040 0.527
ENSG00000155849 E016 3.1010844 0.0679618854 0.8052804694 0.927903674 7 36895009 36895017 9 - 0.610 0.562 -0.216
ENSG00000155849 E017 1.2608206 0.0114168548 0.1439609408 0.404037539 7 36984915 36985060 146 - 0.141 0.381 1.866
ENSG00000155849 E018 2.2572053 0.0070607059 0.2151771879 0.500900620 7 36985923 36986509 587 - 0.333 0.523 1.018
ENSG00000155849 E019 1.7151387 0.0828499930 0.1545376168 0.419975402 7 37013299 37013435 137 - 0.567 0.320 -1.304
ENSG00000155849 E020 1.6392426 0.0092636515 0.0563865822 0.236831549 7 37030665 37030778 114 - 0.141 0.458 2.281
ENSG00000155849 E021 0.0000000       7 37033347 37033412 66 -      
ENSG00000155849 E022 2.5752908 0.0145947137 0.0872017054 0.306014495 7 37096619 37096677 59 - 0.685 0.434 -1.166
ENSG00000155849 E023 3.6647583 0.0293450111 0.0116652888 0.088916513 7 37096678 37096727 50 - 0.855 0.503 -1.496
ENSG00000155849 E024 0.0000000       7 37133006 37133129 124 -      
ENSG00000155849 E025 5.8139932 0.0114875409 0.3365085419 0.628436693 7 37133130 37133234 105 - 0.877 0.754 -0.484
ENSG00000155849 E026 0.0000000       7 37197101 37197223 123 -      
ENSG00000155849 E027 0.7625052 0.0139531674 0.1026153157 0.334893770 7 37211085 37211385 301 - 0.000 0.287 13.378
ENSG00000155849 E028 5.7142397 0.0025138583 0.8754854682 0.957499768 7 37211386 37211517 132 - 0.805 0.777 -0.111
ENSG00000155849 E029 5.1830725 0.0029639446 0.1278778187 0.379059488 7 37213335 37213457 123 - 0.877 0.690 -0.747
ENSG00000155849 E030 3.6948256 0.0104007526 0.1165264729 0.360095043 7 37216645 37216695 51 - 0.778 0.562 -0.917
ENSG00000155849 E031 0.0000000       7 37216696 37216698 3 -      
ENSG00000155849 E032 0.0000000       7 37217712 37217756 45 -      
ENSG00000155849 E033 3.5758375 0.0526347381 0.2375446479 0.526559246 7 37222615 37222693 79 - 0.749 0.562 -0.801
ENSG00000155849 E034 6.0957798 0.0393716473 0.0005862698 0.009881211 7 37224879 37225030 152 - 1.085 0.631 -1.770
ENSG00000155849 E035 2.9079040 0.0997969246 0.0043761480 0.045185556 7 37233095 37233104 10 - 0.855 0.351 -2.304
ENSG00000155849 E036 5.2364129 0.0029402632 0.0001009965 0.002393297 7 37233105 37233194 90 - 1.026 0.580 -1.777
ENSG00000155849 E037 3.7801245 0.0105471156 0.0042080682 0.044013060 7 37244356 37244391 36 - 0.877 0.503 -1.584
ENSG00000155849 E038 6.7231684 0.0238538991 0.0015189781 0.020692862 7 37259181 37259350 170 - 1.085 0.703 -1.461
ENSG00000155849 E039 0.6351480 0.0398138539 0.1652241454 0.434798685 7 37269454 37271831 2378 - 0.000 0.250 13.096
ENSG00000155849 E040 3.5180202 0.0828987128 0.0032589960 0.036756732 7 37271832 37271882 51 - 0.899 0.434 -2.013
ENSG00000155849 E041 2.4304733 0.0241691197 0.0068985537 0.062500688 7 37314850 37314864 15 - 0.749 0.351 -1.888
ENSG00000155849 E042 3.3929409 0.0346793954 0.0006100687 0.010189416 7 37314865 37314922 58 - 0.899 0.408 -2.151
ENSG00000155849 E043 3.1965418 0.1493291662 0.2643209150 0.557349450 7 37315920 37315960 41 - 0.750 0.503 -1.082
ENSG00000155849 E044 4.4258504 0.0639078910 0.0757647914 0.281254701 7 37342613 37342763 151 - 0.877 0.598 -1.144
ENSG00000155849 E045 0.0000000       7 37343052 37343179 128 -      
ENSG00000155849 E046 0.0000000       7 37353032 37353668 637 -      
ENSG00000155849 E047 0.0000000       7 37393822 37393917 96 -      
ENSG00000155849 E048 0.2356421 0.0160669703 0.0585605112   7 37429257 37429756 500 - 0.248 0.000 -14.488
ENSG00000155849 E049 2.7061719 0.1488150947 0.2207448292 0.507723372 7 37448675 37448859 185 - 0.686 0.458 -1.042
ENSG00000155849 E050 0.4909842 0.4434247350 0.4708842108   7 37448860 37449223 364 - 0.248 0.118 -1.305

Help

Please Click HERE to learn more details about the results from DEXseq.