ENSG00000155906

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000444024 ENSG00000155906 No_inf pgKDN_inf RMND1 protein_coding protein_coding 28.90875 24.77198 36.26042 1.17275 1.011035 0.5495021 12.3594538 9.296522 14.9644869 0.5494763 0.8956723 0.6861925 0.43010833 0.376625 0.412500 0.035875 0.87571486 0.02236985 FALSE  
ENST00000622845 ENSG00000155906 No_inf pgKDN_inf RMND1 protein_coding protein_coding 28.90875 24.77198 36.26042 1.17275 1.011035 0.5495021 8.7313251 6.531286 11.3795924 2.2977255 1.1586095 0.8000699 0.29914167 0.264300 0.313175 0.048875 0.86121426 0.02236985 FALSE  
ENST00000643564 ENSG00000155906 No_inf pgKDN_inf RMND1 protein_coding retained_intron 28.90875 24.77198 36.26042 1.17275 1.011035 0.5495021 0.7755247 2.043771 0.1425543 0.7413657 0.1425543 -3.7508802 0.02945000 0.078900 0.004150 -0.074750 0.02236985 0.02236985 FALSE  
ENST00000646926 ENSG00000155906 No_inf pgKDN_inf RMND1 protein_coding nonsense_mediated_decay 28.90875 24.77198 36.26042 1.17275 1.011035 0.5495021 0.6239839 0.000000 1.8719517 0.0000000 1.8719517 7.5560858 0.01720833 0.000000 0.051625 0.051625 0.88029040 0.02236985 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000155906 E001 5.4174797 0.0027347504 0.0579919521 0.241058801 6 151398898 151399778 881 - 0.695 0.914 0.864
ENSG00000155906 E002 0.1268540 0.0124990733 0.3942935570   6 151404762 151404784 23 - 0.000 0.110 11.815
ENSG00000155906 E003 0.1268540 0.0124990733 0.3942935570   6 151404785 151404794 10 - 0.000 0.110 11.815
ENSG00000155906 E004 0.5063750 0.1814127312 0.0381005324 0.188385684 6 151404795 151404853 59 - 0.000 0.333 13.285
ENSG00000155906 E005 0.7423645 0.0968989666 0.2779816064 0.571214233 6 151404854 151404883 30 - 0.151 0.333 1.468
ENSG00000155906 E006 1.2417511 0.0217095402 0.0870519045 0.305767334 6 151404884 151404900 17 - 0.211 0.479 1.691
ENSG00000155906 E007 1.6042747 0.0094196363 0.1726117894 0.445405785 6 151404901 151404905 5 - 0.310 0.519 1.147
ENSG00000155906 E008 1.6042747 0.0094196363 0.1726117894 0.445405785 6 151404906 151404906 1 - 0.310 0.519 1.147
ENSG00000155906 E009 12.8434455 0.0354646884 0.4301848984 0.708178266 6 151404907 151405052 146 - 1.095 1.188 0.331
ENSG00000155906 E010 12.7646209 0.0252708779 0.1136100101 0.354761596 6 151405053 151405112 60 - 1.057 1.219 0.579
ENSG00000155906 E011 34.2597680 0.0004283829 0.5590594899 0.800406016 6 151405113 151405267 155 - 1.527 1.565 0.128
ENSG00000155906 E012 9.4026663 0.0021168339 0.0188470900 0.122068193 6 151405720 151405720 1 - 1.095 0.882 -0.789
ENSG00000155906 E013 25.2031044 0.0005795733 0.0543675730 0.232184709 6 151405721 151405836 116 - 1.457 1.354 -0.358
ENSG00000155906 E014 1.3600146 0.0093947475 0.1627821636 0.431324396 6 151407970 151408642 673 - 0.263 0.479 1.276
ENSG00000155906 E015 1.4628211 0.0674048047 0.9641703748 0.992438942 6 151408643 151408900 258 - 0.390 0.387 -0.018
ENSG00000155906 E016 0.7287988 0.0407087560 0.6564009878 0.856175022 6 151410839 151410911 73 - 0.263 0.198 -0.532
ENSG00000155906 E017 0.4792182 0.0257697650 0.4890811650   6 151416458 151416590 133 - 0.211 0.110 -1.116
ENSG00000155906 E018 1.7490694 0.0129827880 0.0067551393 0.061588890 6 151416591 151417080 490 - 0.211 0.620 2.343
ENSG00000155906 E019 0.3721553 0.2155907144 0.4630549574   6 151417081 151417138 58 - 0.082 0.198 1.469
ENSG00000155906 E020 0.1187032 0.0119078284 0.7290889437   6 151417139 151417278 140 - 0.082 0.000 -11.836
ENSG00000155906 E021 31.0224470 0.0005645592 0.0203488416 0.128316897 6 151417279 151417399 121 - 1.548 1.435 -0.390
ENSG00000155906 E022 0.8524055 0.0655535333 0.9828063873 0.998690264 6 151418533 151418579 47 - 0.263 0.270 0.053
ENSG00000155906 E023 3.1806457 0.0579000764 0.5124494665 0.769423165 6 151420706 151421244 539 - 0.569 0.676 0.469
ENSG00000155906 E024 23.3020713 0.0006136463 0.2017354897 0.484089780 6 151421245 151421321 77 - 1.411 1.343 -0.236
ENSG00000155906 E025 0.9882947 0.0114825074 0.2592910863 0.551827077 6 151421322 151422540 1219 - 0.211 0.387 1.206
ENSG00000155906 E026 20.4863092 0.0050594185 0.6015496011 0.825752083 6 151422541 151422605 65 - 1.309 1.354 0.158
ENSG00000155906 E027 0.9894903 0.5566206438 0.3967998783 0.681336205 6 151422606 151423524 919 - 0.211 0.387 1.202
ENSG00000155906 E028 10.6287270 0.0064918793 0.4097955930 0.691918740 6 151423525 151423525 1 - 1.024 1.107 0.303
ENSG00000155906 E029 26.6959007 0.0005282080 0.6737067598 0.864921638 6 151423526 151423631 106 - 1.425 1.457 0.111
ENSG00000155906 E030 22.3641505 0.0006754817 0.4356935216 0.712267843 6 151427482 151427582 101 - 1.382 1.343 -0.136
ENSG00000155906 E031 0.1265070 0.0122714777 0.3945536455   6 151429513 151429782 270 - 0.000 0.110 11.816
ENSG00000155906 E032 0.3635311 0.0166182719 0.7897075116   6 151429783 151429935 153 - 0.151 0.110 -0.531
ENSG00000155906 E033 0.6179646 0.0148000112 0.4350525718 0.711961811 6 151429936 151430137 202 - 0.151 0.270 1.053
ENSG00000155906 E034 14.5906293 0.0123539311 0.7658996972 0.909053625 6 151430138 151430177 40 - 1.198 1.179 -0.066
ENSG00000155906 E035 0.1272623 0.0123680666 0.3944302281   6 151430178 151430203 26 - 0.000 0.110 11.816
ENSG00000155906 E036 18.4803390 0.0008362123 0.5562837546 0.798624814 6 151433155 151433230 76 - 1.300 1.269 -0.109
ENSG00000155906 E037 1.7484391 0.0088824825 0.0064546528 0.059447617 6 151433231 151434383 1153 - 0.211 0.620 2.343
ENSG00000155906 E038 0.7348701 0.0141491951 0.7129706090 0.884057968 6 151436235 151436419 185 - 0.211 0.270 0.469
ENSG00000155906 E039 0.8610297 0.0135722664 0.4400434519 0.715848010 6 151436420 151436445 26 - 0.211 0.333 0.884
ENSG00000155906 E040 18.0857103 0.0007763047 0.2201753003 0.506999174 6 151436446 151436554 109 - 1.309 1.234 -0.263
ENSG00000155906 E041 0.4988531 0.0419270764 0.2001686165   6 151436555 151436826 272 - 0.082 0.270 2.053
ENSG00000155906 E042 0.6253903 0.0141876030 0.0901943161 0.311989507 6 151444466 151444625 160 - 0.082 0.333 2.469
ENSG00000155906 E043 0.6354303 0.0323407026 0.0089550130 0.074688380 6 151444970 151445035 66 - 0.000 0.387 13.866
ENSG00000155906 E044 1.6424817 0.0088536069 0.0001603997 0.003488306 6 151445036 151445307 272 - 0.082 0.649 4.053
ENSG00000155906 E045 59.2189836 0.0003524043 0.4418520567 0.717220060 6 151445308 151445825 518 - 1.785 1.766 -0.065
ENSG00000155906 E046 0.0000000       6 151445826 151446030 205 -      
ENSG00000155906 E047 0.1272623 0.0123680666 0.3944302281   6 151448621 151448955 335 - 0.000 0.110 11.816
ENSG00000155906 E048 4.5592438 0.0032505539 0.0161811799 0.110527136 6 151452016 151452158 143 - 0.847 0.555 -1.220

Help

Please Click HERE to learn more details about the results from DEXseq.