ENSG00000156313

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000339363 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding protein_coding 8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.3652150 0.7923253 0.0000000 0.4277035 0.0000000 -6.3261154 0.05370833 0.131750 0.000000 -0.131750 0.10796862 0.04540971 FALSE TRUE
ENST00000464437 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding protein_coding 8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.4590670 1.3772009 0.0000000 0.4641220 0.0000000 -7.1160329 0.07477500 0.224325 0.000000 -0.224325 0.04540971 0.04540971 FALSE TRUE
ENST00000476559 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding retained_intron 8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.8242299 1.2394565 0.2204002 0.3703539 0.1277139 -2.4390867 0.11020000 0.190675 0.027325 -0.163350 0.18763961 0.04540971   FALSE
ENST00000642395 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding protein_coding 8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.6079458 0.3249336 0.7210274 0.3249336 0.7210274 1.1260503 0.08985000 0.048650 0.128600 0.079950 1.00000000 0.04540971 FALSE TRUE
ENST00000642739 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding nonsense_mediated_decay 8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.7998167 0.6648708 1.2051323 0.2408736 0.4530961 0.8484303 0.10466667 0.106500 0.151525 0.045025 0.89453905 0.04540971 TRUE TRUE
ENST00000645124 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding nonsense_mediated_decay 8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.5335541 0.0000000 0.7240597 0.0000000 0.7240597 6.1978254 0.06638333 0.000000 0.083800 0.083800 0.84899091 0.04540971 TRUE TRUE
MSTRG.29861.10 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding   8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.3036935 0.0000000 0.5878973 0.0000000 0.5878973 5.9018258 0.03515833 0.000000 0.063275 0.063275 0.84565872 0.04540971 FALSE TRUE
MSTRG.29861.3 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding   8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 0.3297864 0.0000000 0.6056812 0.0000000 0.6056812 5.9441117 0.03585833 0.000000 0.086300 0.086300 0.85622004 0.04540971 TRUE TRUE
MSTRG.29861.6 ENSG00000156313 No_inf pgKDN_inf RPGR protein_coding   8.059889 6.305851 7.639744 0.3869421 0.8291457 0.2764345 2.7126641 1.8064204 3.2198274 0.2811983 0.6663173 0.8303589 0.34198333 0.282050 0.407750 0.125700 0.78282420 0.04540971 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000156313 E001 0.0000000       X 38269163 38269170 8 -      
ENSG00000156313 E002 0.2352613 0.295070528 4.762213e-01   X 38269171 38269342 172 - 0.146 0.000 -11.448
ENSG00000156313 E003 0.4892516 0.095249691 7.222467e-01   X 38269343 38269348 6 - 0.146 0.204 0.578
ENSG00000156313 E004 0.4892516 0.095249691 7.222467e-01   X 38269349 38269352 4 - 0.146 0.204 0.578
ENSG00000156313 E005 1.2246584 0.033026727 5.845613e-01 0.815390736 X 38269353 38269401 49 - 0.301 0.397 0.578
ENSG00000156313 E006 1.3416624 0.020580709 7.681928e-01 0.910305000 X 38269402 38269413 12 - 0.343 0.397 0.315
ENSG00000156313 E007 1.9754587 0.077379274 1.415561e-01 0.400287729 X 38269414 38269479 66 - 0.343 0.601 1.315
ENSG00000156313 E008 1.2234029 0.011530091 5.606166e-01 0.801136236 X 38269480 38269496 17 - 0.301 0.397 0.578
ENSG00000156313 E009 1.1063989 0.012314935 3.776237e-01 0.664689716 X 38269497 38269519 23 - 0.256 0.397 0.900
ENSG00000156313 E010 0.9881390 0.075712637 2.477398e-01 0.538484998 X 38269520 38269526 7 - 0.204 0.397 1.314
ENSG00000156313 E011 10.7572836 0.024495561 3.198739e-01 0.612666563 X 38269527 38269832 306 - 1.018 1.123 0.380
ENSG00000156313 E012 0.0000000       X 38272311 38272589 279 -      
ENSG00000156313 E013 4.0311990 0.003783531 5.836315e-01 0.814753214 X 38273386 38273429 44 - 0.663 0.739 0.315
ENSG00000156313 E014 3.6576580 0.005173551 7.723260e-01 0.912338346 X 38273430 38273477 48 - 0.644 0.689 0.191
ENSG00000156313 E015 0.4988535 0.047658041 1.760475e-01   X 38273478 38273501 24 - 0.079 0.278 2.162
ENSG00000156313 E016 1.2530815 0.010512881 1.171442e-02 0.089210953 X 38273502 38273942 441 - 0.146 0.530 2.578
ENSG00000156313 E017 4.3955839 0.006834273 6.566228e-01 0.856307176 X 38275089 38275146 58 - 0.700 0.762 0.256
ENSG00000156313 E018 8.9220660 0.001722352 2.995670e-01 0.592476862 X 38276587 38276772 186 - 0.945 1.048 0.380
ENSG00000156313 E019 0.1176306 0.012014561 7.993435e-01   X 38279167 38279205 39 - 0.079 0.000 -10.449
ENSG00000156313 E020 2.3021047 0.006580274 7.284509e-01 0.891719590 X 38284408 38287093 2686 - 0.532 0.490 -0.200
ENSG00000156313 E021 5.7993212 0.002630915 1.674568e-01 0.438083340 X 38287094 38287245 152 - 0.881 0.739 -0.560
ENSG00000156313 E022 1.5242863 0.079842231 3.854348e-05 0.001066724 X 38287246 38287860 615 - 0.000 0.662 15.083
ENSG00000156313 E023 1.4411983 0.010009020 2.565861e-01 0.548654685 X 38287861 38287864 4 - 0.448 0.278 -1.007
ENSG00000156313 E024 3.7658788 0.003905780 8.168873e-01 0.933368637 X 38287865 38288041 177 - 0.682 0.662 -0.085
ENSG00000156313 E025 2.4190818 0.092713389 4.364391e-01 0.712842289 X 38290959 38291024 66 - 0.581 0.446 -0.646
ENSG00000156313 E026 2.5157863 0.005921931 3.372042e-02 0.174753735 X 38291393 38291484 92 - 0.644 0.342 -1.510
ENSG00000156313 E027 0.2451451 0.017156676 7.691450e-01   X 38295985 38296144 160 - 0.079 0.114 0.578
ENSG00000156313 E028 1.2057864 0.163421260 6.000912e-01 0.824793735 X 38297284 38297307 24 - 0.381 0.278 -0.644
ENSG00000156313 E029 3.6476142 0.004147273 9.307563e-01 0.979806582 X 38297308 38297452 145 - 0.663 0.662 -0.007
ENSG00000156313 E030 0.0000000       X 38298331 38298447 117 -      
ENSG00000156313 E031 3.0503269 0.004841978 7.429254e-01 0.898394941 X 38298956 38298969 14 - 0.580 0.632 0.230
ENSG00000156313 E032 4.8624610 0.002988155 9.242037e-01 0.976951202 X 38298970 38299141 172 - 0.764 0.762 -0.007
ENSG00000156313 E033 2.9102756 0.111960300 7.625086e-01 0.907339009 X 38301247 38301371 125 - 0.602 0.567 -0.158
ENSG00000156313 E034 0.0000000       X 38302613 38302672 60 -      
ENSG00000156313 E035 0.0000000       X 38303601 38303814 214 -      
ENSG00000156313 E036 2.2026951 0.008133948 4.337472e-01 0.711061787 X 38304635 38304699 65 - 0.448 0.567 0.578
ENSG00000156313 E037 2.8947299 0.007329217 2.378541e-01 0.526856303 X 38304700 38304790 91 - 0.644 0.490 -0.702
ENSG00000156313 E038 0.0000000       X 38304791 38304831 41 -      
ENSG00000156313 E039 3.7361621 0.010829204 1.851252e-01 0.462690315 X 38310615 38310773 159 - 0.733 0.567 -0.712
ENSG00000156313 E040 0.0000000       X 38317246 38317315 70 -      
ENSG00000156313 E041 3.5927078 0.116463273 1.763259e-01 0.450469201 X 38317316 38317465 150 - 0.748 0.490 -1.137
ENSG00000156313 E042 0.0000000       X 38317811 38317893 83 -      
ENSG00000156313 E043 2.7840317 0.221307530 8.265658e-01 0.937160840 X 38318829 38318987 159 - 0.603 0.530 -0.330
ENSG00000156313 E044 0.0000000       X 38318988 38318990 3 -      
ENSG00000156313 E045 1.4501659 0.010299215 5.975337e-01 0.823313666 X 38321027 38321089 63 - 0.415 0.342 -0.422
ENSG00000156313 E046 1.7947534 0.008397062 8.810016e-02 0.307905279 X 38322853 38322945 93 - 0.532 0.278 -1.422
ENSG00000156313 E047 3.0309039 0.004909142 6.262921e-01 0.839386988 X 38323399 38323524 126 - 0.624 0.567 -0.252
ENSG00000156313 E048 0.0000000       X 38325773 38325935 163 -      
ENSG00000156313 E049 0.0000000       X 38326678 38326952 275 -      
ENSG00000156313 E050 2.7871768 0.005166663 5.541202e-01 0.797015780 X 38327340 38327544 205 - 0.603 0.530 -0.329

Help

Please Click HERE to learn more details about the results from DEXseq.