ENSG00000156398

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000369893 ENSG00000156398 No_inf pgKDN_inf SFXN2 protein_coding protein_coding 1.992647 1.11787 2.898779 0.1604228 0.3598427 1.366814 0.79150522 0.9422743 0.6604143 0.09165589 0.1004796 -0.5063243 0.50815000 0.885175 0.239525 -0.645650 0.044613581 0.006339899 FALSE TRUE
ENST00000602439 ENSG00000156398 No_inf pgKDN_inf SFXN2 protein_coding protein_coding 1.992647 1.11787 2.898779 0.1604228 0.3598427 1.366814 0.05556126 0.0000000 0.1666838 0.00000000 0.1666838 4.1430976 0.01716667 0.000000 0.051500 0.051500 0.966663581 0.006339899 FALSE FALSE
ENST00000602647 ENSG00000156398 No_inf pgKDN_inf SFXN2 protein_coding protein_coding 1.992647 1.11787 2.898779 0.1604228 0.3598427 1.366814 0.03845336 0.1153601 0.0000000 0.11536007 0.0000000 -3.6480060 0.02514167 0.075425 0.000000 -0.075425 0.539149527 0.006339899   FALSE
ENST00000602785 ENSG00000156398 No_inf pgKDN_inf SFXN2 protein_coding protein_coding_CDS_not_defined 1.992647 1.11787 2.898779 0.1604228 0.3598427 1.366814 0.07417132 0.0000000 0.2225140 0.00000000 0.2225140 4.5392454 0.02946667 0.000000 0.088400 0.088400 0.992313497 0.006339899 FALSE TRUE
ENST00000602868 ENSG00000156398 No_inf pgKDN_inf SFXN2 protein_coding protein_coding 1.992647 1.11787 2.898779 0.1604228 0.3598427 1.366814 0.13819121 0.0000000 0.0000000 0.00000000 0.0000000 0.0000000 0.05672500 0.000000 0.000000 0.000000   0.006339899 FALSE FALSE
MSTRG.3931.16 ENSG00000156398 No_inf pgKDN_inf SFXN2 protein_coding   1.992647 1.11787 2.898779 0.1604228 0.3598427 1.366814 0.09321038 0.0000000 0.0000000 0.00000000 0.0000000 0.0000000 0.05111667 0.000000 0.000000 0.000000   0.006339899 FALSE TRUE
MSTRG.3931.2 ENSG00000156398 No_inf pgKDN_inf SFXN2 protein_coding   1.992647 1.11787 2.898779 0.1604228 0.3598427 1.366814 0.61638908 0.0000000 1.8491673 0.00000000 0.5076724 7.5385128 0.20685833 0.000000 0.620575 0.620575 0.006339899 0.006339899 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000156398 E001 0.0000000       10 102714538 102714600 63 +      
ENSG00000156398 E002 0.0000000       10 102714601 102714626 26 +      
ENSG00000156398 E003 0.1186381 0.0119952736 0.4808003537   10 102714627 102714630 4 + 0.104 0.000 -10.776
ENSG00000156398 E004 0.1186381 0.0119952736 0.4808003537   10 102714631 102714634 4 + 0.104 0.000 -12.854
ENSG00000156398 E005 0.1186381 0.0119952736 0.4808003537   10 102714635 102714635 1 + 0.104 0.000 -12.854
ENSG00000156398 E006 0.1186381 0.0119952736 0.4808003537   10 102714636 102714637 2 + 0.104 0.000 -12.854
ENSG00000156398 E007 0.4702767 0.0174283122 0.0340274646   10 102714638 102714658 21 + 0.319 0.000 -14.292
ENSG00000156398 E008 0.7076180 0.0138391580 0.0061649130 0.05760174 10 102714659 102714681 23 + 0.419 0.000 -14.648
ENSG00000156398 E009 0.1265070 0.0125890285 0.6022005578   10 102714682 102714995 314 + 0.000 0.087 11.182
ENSG00000156398 E010 0.0000000       10 102715223 102715328 106 +      
ENSG00000156398 E011 0.1186381 0.0119952736 0.4808003537   10 102716234 102716329 96 + 0.104 0.000 -12.854
ENSG00000156398 E012 0.0000000       10 102716589 102716613 25 +      
ENSG00000156398 E013 0.0000000       10 102716614 102716711 98 +      
ENSG00000156398 E014 0.2452102 0.0168276243 0.9260667237   10 102717703 102717780 78 + 0.104 0.087 -0.292
ENSG00000156398 E015 0.0000000       10 102724936 102724996 61 +      
ENSG00000156398 E016 0.0000000       10 102726500 102726611 112 +      
ENSG00000156398 E017 0.8348194 0.0132470419 0.0335467320 0.17426828 10 102726612 102726700 89 + 0.419 0.087 -2.877
ENSG00000156398 E018 0.3722815 0.0168219877 0.6586828904   10 102726701 102726777 77 + 0.104 0.159 0.708
ENSG00000156398 E019 0.6075427 0.0197693369 0.5625112277 0.80235059 10 102726778 102726797 20 + 0.258 0.159 -0.877
ENSG00000156398 E020 1.9468192 0.0091868867 0.4592654395 0.73104572 10 102726987 102727157 171 + 0.536 0.406 -0.655
ENSG00000156398 E021 0.0000000       10 102727675 102727791 117 +      
ENSG00000156398 E022 2.5542748 0.0165603938 0.3454704527 0.63648983 10 102728431 102728529 99 + 0.628 0.476 -0.707
ENSG00000156398 E023 0.1272623 0.0138173199 0.6012270110   10 102728530 102728644 115 + 0.000 0.087 11.182
ENSG00000156398 E024 0.6167661 0.0149598387 0.7514008484 0.90202220 10 102729319 102729322 4 + 0.188 0.221 0.293
ENSG00000156398 E025 1.5787827 0.0086109183 0.2940147128 0.58744127 10 102729323 102729394 72 + 0.501 0.323 -0.970
ENSG00000156398 E026 0.3713386 0.1606873490 0.7004680504   10 102729395 102729506 112 + 0.104 0.159 0.708
ENSG00000156398 E027 1.7132571 0.0088414483 0.8284774552 0.93791279 10 102729723 102729808 86 + 0.462 0.406 -0.292
ENSG00000156398 E028 1.2303624 0.0763337509 0.6861942344 0.87035520 10 102731723 102731783 61 + 0.319 0.367 0.293
ENSG00000156398 E029 1.4813281 0.0110575020 0.6990725863 0.87740503 10 102732152 102732218 67 + 0.372 0.406 0.193
ENSG00000156398 E030 1.2273378 0.0117708465 0.8610159754 0.95185395 10 102732859 102732871 13 + 0.372 0.323 -0.292
ENSG00000156398 E031 0.7375794 0.0395508637 0.8969128932 0.96599437 10 102732872 102732908 37 + 0.258 0.221 -0.292
ENSG00000156398 E032 1.2176737 0.0540937579 0.4260092171 0.70481859 10 102733554 102733603 50 + 0.419 0.275 -0.878
ENSG00000156398 E033 0.9803324 0.0195031024 0.8630064942 0.95270575 10 102735862 102735909 48 + 0.319 0.275 -0.292
ENSG00000156398 E034 22.4836742 0.0007507893 0.0007209564 0.01160718 10 102737663 102743492 5830 + 1.300 1.411 0.386

Help

Please Click HERE to learn more details about the results from DEXseq.