ENSG00000156504

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000343004 ENSG00000156504 No_inf pgKDN_inf PABIR2 protein_coding protein_coding 31.18993 34.68591 29.23815 1.986197 1.301993 -0.2464205 11.462624 13.644066 12.025153 0.08187432 0.3292176 -0.1820761 0.367575 0.396875 0.412400 0.015525 0.96172354 0.01231022 FALSE TRUE
ENST00000465128 ENSG00000156504 No_inf pgKDN_inf PABIR2 protein_coding protein_coding_CDS_not_defined 31.18993 34.68591 29.23815 1.986197 1.301993 -0.2464205 3.695797 1.514943 1.719354 1.51494307 1.7193541 0.1814779 0.117525 0.037275 0.059225 0.021950 1.00000000 0.01231022 FALSE TRUE
ENST00000486347 ENSG00000156504 No_inf pgKDN_inf PABIR2 protein_coding protein_coding 31.18993 34.68591 29.23815 1.986197 1.301993 -0.2464205 2.248442 0.000000 4.644008 0.00000000 1.7568255 8.8623300 0.077275 0.000000 0.156100 0.156100 0.01231022 0.01231022 FALSE TRUE
MSTRG.30484.5 ENSG00000156504 No_inf pgKDN_inf PABIR2 protein_coding   31.18993 34.68591 29.23815 1.986197 1.301993 -0.2464205 11.007830 17.128210 10.314089 1.92018569 0.7430617 -0.7312020 0.349250 0.506800 0.351475 -0.155325 0.50725823 0.01231022 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000156504 E001 0.000000       X 134769566 134769566 1 -      
ENSG00000156504 E002 0.000000       X 134769567 134769574 8 -      
ENSG00000156504 E003 246.492919 0.0001019856 1.927583e-10 1.866468e-08 X 134769575 134771095 1521 - 2.323 2.423 0.332
ENSG00000156504 E004 42.436319 0.0003805465 4.367721e-01 7.132120e-01 X 134771096 134771354 259 - 1.609 1.644 0.119
ENSG00000156504 E005 22.504876 0.0006764173 5.988529e-03 5.641665e-02 X 134771355 134771573 219 - 1.456 1.287 -0.584
ENSG00000156504 E006 30.437603 0.0004807489 4.864941e-04 8.549552e-03 X 134771574 134771896 323 - 1.590 1.405 -0.633
ENSG00000156504 E007 25.253811 0.0019348844 9.121349e-05 2.201997e-03 X 134771897 134772078 182 - 1.535 1.301 -0.809
ENSG00000156504 E008 8.273074 0.0017055621 6.063453e-03 5.694547e-02 X 134772079 134772100 22 - 1.096 0.835 -0.973
ENSG00000156504 E009 9.283089 0.0044834513 4.537737e-02 2.083411e-01 X 134772101 134772142 42 - 1.106 0.919 -0.687
ENSG00000156504 E010 20.677183 0.0034702614 7.377693e-01 8.959078e-01 X 134772143 134772283 141 - 1.341 1.319 -0.079
ENSG00000156504 E011 20.851994 0.0154212777 6.227885e-01 8.375175e-01 X 134781821 134781917 97 - 1.306 1.348 0.148
ENSG00000156504 E012 19.701079 0.0106795022 9.241227e-01 9.769512e-01 X 134785886 134785947 62 - 1.312 1.306 -0.022
ENSG00000156504 E013 9.010923 0.0324401035 7.730003e-01 9.126151e-01 X 134785948 134785950 3 - 0.969 1.008 0.143
ENSG00000156504 E014 21.865563 0.0007313768 3.623810e-01 6.516114e-01 X 134787472 134787533 62 - 1.385 1.327 -0.199
ENSG00000156504 E015 28.350889 0.0005122444 1.181355e-01 3.630917e-01 X 134788730 134788831 102 - 1.509 1.423 -0.296
ENSG00000156504 E016 21.067727 0.0010853697 8.876085e-01 9.624007e-01 X 134789085 134789139 55 - 1.341 1.332 -0.034
ENSG00000156504 E017 14.620946 0.0161636434 4.604953e-01 7.319245e-01 X 134789223 134789266 44 - 1.225 1.157 -0.241
ENSG00000156504 E018 7.388997 0.0294620061 8.539603e-01 9.484206e-01 X 134789580 134789636 57 - 0.927 0.908 -0.072
ENSG00000156504 E019 15.658202 0.0209236144 9.176313e-01 9.740666e-01 X 134793815 134793893 79 - 1.210 1.216 0.022
ENSG00000156504 E020 20.668623 0.0044342326 7.455070e-01 8.993300e-01 X 134796108 134796355 248 - 1.341 1.319 -0.079
ENSG00000156504 E021 25.242454 0.0106733127 8.242392e-01 9.361749e-01 X 134796356 134797120 765 - 1.419 1.405 -0.048
ENSG00000156504 E022 2.357525 0.0172509222 3.627711e-01 6.519203e-01 X 134797121 134797232 112 - 0.435 0.570 0.657

Help

Please Click HERE to learn more details about the results from DEXseq.