ENSG00000156990

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000383820 ENSG00000156990 No_inf pgKDN_inf RPUSD3 protein_coding protein_coding 25.71232 28.95612 23.47315 0.76339 0.836328 -0.3027404 14.460616 14.981911 13.1007168 1.1232657 1.0070896 -0.1934377 0.56906667 0.518600 0.563800 0.045200 0.88909466 0.02016403 FALSE  
ENST00000433555 ENSG00000156990 No_inf pgKDN_inf RPUSD3 protein_coding protein_coding 25.71232 28.95612 23.47315 0.76339 0.836328 -0.3027404 1.400520 1.261643 0.4326362 1.2616431 0.4326362 -1.5225005 0.05085833 0.041575 0.017875 -0.023700 1.00000000 0.02016403 FALSE  
ENST00000433972 ENSG00000156990 No_inf pgKDN_inf RPUSD3 protein_coding protein_coding 25.71232 28.95612 23.47315 0.76339 0.836328 -0.3027404 3.573059 3.867842 4.7271551 0.8569279 0.4530324 0.2887671 0.14270000 0.135875 0.200975 0.065100 0.73325959 0.02016403 FALSE  
ENST00000466141 ENSG00000156990 No_inf pgKDN_inf RPUSD3 protein_coding retained_intron 25.71232 28.95612 23.47315 0.76339 0.836328 -0.3027404 1.974820 3.105955 1.1141887 0.3215953 0.3432795 -1.4707903 0.07374167 0.106875 0.046400 -0.060475 0.46773169 0.02016403 FALSE  
ENST00000472381 ENSG00000156990 No_inf pgKDN_inf RPUSD3 protein_coding retained_intron 25.71232 28.95612 23.47315 0.76339 0.836328 -0.3027404 1.167922 2.871854 0.1845983 0.4139948 0.1845983 -3.8884265 0.04241667 0.099275 0.007625 -0.091650 0.02016403 0.02016403 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000156990 E001 1.1055748 0.0256369784 0.953541878 0.98855005 3 9837849 9837859 11 - 0.326 0.316 -0.066
ENSG00000156990 E002 1.7120553 0.0105583746 0.626365460 0.83941843 3 9837860 9837881 22 - 0.471 0.398 -0.387
ENSG00000156990 E003 1.9644401 0.1724404610 0.972789618 0.99491389 3 9837882 9837893 12 - 0.471 0.466 -0.024
ENSG00000156990 E004 9.7585853 0.0204629617 0.409631855 0.69187987 3 9837894 9838019 126 - 0.973 1.060 0.320
ENSG00000156990 E005 16.3765950 0.0304727304 0.982440540 0.99869026 3 9838020 9838164 145 - 1.237 1.232 -0.018
ENSG00000156990 E006 9.0394020 0.0506951744 0.145165327 0.40545781 3 9838165 9838207 43 - 1.096 0.906 -0.702
ENSG00000156990 E007 0.6168947 0.0147686438 0.878385266 0.95871693 3 9838985 9839031 47 - 0.193 0.215 0.197
ENSG00000156990 E008 18.3671606 0.0264033909 0.838765916 0.94210680 3 9839032 9839171 140 - 1.271 1.288 0.061
ENSG00000156990 E009 6.9855499 0.0020861088 0.004051856 0.04280760 3 9839172 9839713 542 - 0.692 0.999 1.197
ENSG00000156990 E010 0.4896599 0.0667514528 0.801330423   3 9839901 9839940 40 - 0.193 0.155 -0.387
ENSG00000156990 E011 2.0755029 0.0320641959 0.460934865 0.73200502 3 9839941 9840183 243 - 0.546 0.433 -0.558
ENSG00000156990 E012 14.3331498 0.0011577564 0.220925857 0.50790079 3 9840184 9840307 124 - 1.124 1.215 0.323
ENSG00000156990 E013 0.2448930 0.0162786766 0.837146626   3 9840308 9840335 28 - 0.107 0.084 -0.388
ENSG00000156990 E014 0.5001731 0.0189088066 0.464084906 0.73367899 3 9840336 9840531 196 - 0.107 0.215 1.197
ENSG00000156990 E015 11.5975586 0.0014424824 0.418787280 0.69850548 3 9840532 9840616 85 - 1.055 1.121 0.236
ENSG00000156990 E016 0.7433679 0.0264785796 0.618735205 0.83513081 3 9840617 9840681 65 - 0.193 0.269 0.613
ENSG00000156990 E017 0.8702218 0.1329723828 0.462834777 0.73298987 3 9840682 9840697 16 - 0.193 0.316 0.935
ENSG00000156990 E018 14.8769983 0.0411082869 0.928103934 0.97865718 3 9840698 9840805 108 - 1.199 1.192 -0.027
ENSG00000156990 E019 1.0059214 0.0145067881 0.061387341 0.24880626 3 9840806 9841256 451 - 0.107 0.398 2.420
ENSG00000156990 E020 1.6038089 0.0085884282 0.718848460 0.88680068 3 9841257 9841407 151 - 0.380 0.433 0.290
ENSG00000156990 E021 8.3700737 0.0017300225 0.896697991 0.96596309 3 9841408 9841697 290 - 0.960 0.971 0.040
ENSG00000156990 E022 2.4592732 0.0061281230 0.886824080 0.96213985 3 9841698 9841735 38 - 0.546 0.526 -0.098
ENSG00000156990 E023 4.6576585 0.1363359249 0.470438697 0.73812109 3 9841736 9841853 118 - 0.801 0.705 -0.388
ENSG00000156990 E024 6.1563926 0.0515480512 0.913829656 0.97288709 3 9841854 9841982 129 - 0.838 0.858 0.078
ENSG00000156990 E025 21.6548802 0.0008555569 0.039186945 0.19168408 3 9841983 9842082 100 - 1.418 1.293 -0.436
ENSG00000156990 E026 0.1176306 0.0117421241 0.411130977   3 9842083 9842198 116 - 0.107 0.000 -8.715
ENSG00000156990 E027 15.9237618 0.0009681493 0.171726721 0.44436544 3 9842199 9842243 45 - 1.277 1.180 -0.343
ENSG00000156990 E028 2.8388870 0.0053880900 0.678737594 0.86708051 3 9842244 9843150 907 - 0.546 0.602 0.250
ENSG00000156990 E029 0.8784392 0.3077116226 0.218993605 0.50572639 3 9843151 9843464 314 - 0.107 0.359 2.196
ENSG00000156990 E030 19.7816504 0.0007618869 0.610459546 0.83067947 3 9843465 9843601 137 - 1.331 1.297 -0.118
ENSG00000156990 E031 1.3856019 0.0104206541 0.012702924 0.09382628 3 9843602 9843724 123 - 0.107 0.497 2.934
ENSG00000156990 E032 1.7490070 0.0079629660 0.086511342 0.30480159 3 9843725 9843889 165 - 0.265 0.526 1.487
ENSG00000156990 E033 9.1994347 0.0015798997 0.420885361 0.70003488 3 9843890 9844018 129 - 1.044 0.971 -0.272
ENSG00000156990 E034 0.0000000       3 9844502 9844602 101 -      

Help

Please Click HERE to learn more details about the results from DEXseq.