ENSG00000158717

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000312838 ENSG00000158717 No_inf pgKDN_inf RNF166 protein_coding protein_coding 70.31913 83.91129 60.48521 2.540718 0.7535874 -0.472216 46.308676 43.186982 48.894195 4.8689219 0.8356704 0.1790277 0.67652500 0.516275 0.808550 0.292275 0.0001272344 0.0001272344 FALSE TRUE
ENST00000537718 ENSG00000158717 No_inf pgKDN_inf RNF166 protein_coding protein_coding 70.31913 83.91129 60.48521 2.540718 0.7535874 -0.472216 3.068460 7.104174 0.000000 5.2218529 0.0000000 -9.4745524 0.03735000 0.083000 0.000000 -0.083000 0.5453900539 0.0001272344 FALSE TRUE
ENST00000568683 ENSG00000158717 No_inf pgKDN_inf RNF166 protein_coding protein_coding 70.31913 83.91129 60.48521 2.540718 0.7535874 -0.472216 4.975452 8.198149 2.202487 0.7599110 0.2134164 -1.8913881 0.06780833 0.098125 0.036550 -0.061575 0.0870962050 0.0001272344 FALSE TRUE
MSTRG.11729.12 ENSG00000158717 No_inf pgKDN_inf RNF166 protein_coding   70.31913 83.91129 60.48521 2.540718 0.7535874 -0.472216 5.187353 8.409465 2.560456 0.4340932 0.3485894 -1.7117040 0.07071667 0.100500 0.042475 -0.058025 0.1639376032 0.0001272344 FALSE TRUE
MSTRG.11729.2 ENSG00000158717 No_inf pgKDN_inf RNF166 protein_coding   70.31913 83.91129 60.48521 2.540718 0.7535874 -0.472216 3.978714 6.763611 3.108968 0.9223299 0.6921400 -1.1188563 0.05430000 0.079850 0.051150 -0.028700 0.6919202269 0.0001272344 FALSE TRUE
MSTRG.11729.5 ENSG00000158717 No_inf pgKDN_inf RNF166 protein_coding   70.31913 83.91129 60.48521 2.540718 0.7535874 -0.472216 4.094761 7.178767 1.796200 0.7984800 0.5613210 -1.9927870 0.05516667 0.086075 0.029650 -0.056425 0.1657594656 0.0001272344 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000158717 E001 0.000000       16 88696448 88696498 51 -      
ENSG00000158717 E002 0.000000       16 88696499 88696500 2 -      
ENSG00000158717 E003 0.000000       16 88696501 88696501 1 -      
ENSG00000158717 E004 0.000000       16 88696502 88696535 34 -      
ENSG00000158717 E005 0.000000       16 88696536 88696546 11 -      
ENSG00000158717 E006 0.000000       16 88696547 88696638 92 -      
ENSG00000158717 E007 23.118040 0.0028086984 8.825623e-01 9.605125e-01 16 88696639 88696709 71 - 1.369 1.358 -0.039
ENSG00000158717 E008 243.088884 0.0001135214 4.089052e-08 2.597632e-06 16 88696710 88697295 586 - 2.428 2.329 -0.330
ENSG00000158717 E009 48.162680 0.0004760285 2.350182e-04 4.772390e-03 16 88697296 88697393 98 - 1.769 1.608 -0.547
ENSG00000158717 E010 47.709998 0.0002920576 5.362990e-02 2.305699e-01 16 88697394 88697478 85 - 1.721 1.635 -0.293
ENSG00000158717 E011 55.789828 0.0003040653 1.519059e-01 4.155875e-01 16 88697479 88697633 155 - 1.771 1.711 -0.204
ENSG00000158717 E012 13.507503 0.0058551984 6.156227e-04 1.023570e-02 16 88697634 88697933 300 - 0.910 1.227 1.154
ENSG00000158717 E013 17.789566 0.0007847458 2.527176e-06 1.037296e-04 16 88697934 88698501 568 - 0.975 1.351 1.345
ENSG00000158717 E014 7.556089 0.0022742265 7.522023e-01 9.024169e-01 16 88698502 88698609 108 - 0.893 0.924 0.117
ENSG00000158717 E015 27.866294 0.0004984747 1.790486e-01 4.541388e-01 16 88698971 88699070 100 - 1.489 1.411 -0.270
ENSG00000158717 E016 25.046785 0.0005718574 2.383914e-01 5.273317e-01 16 88699071 88699085 15 - 1.441 1.368 -0.252
ENSG00000158717 E017 44.712676 0.0006790467 1.383031e-02 9.919200e-02 16 88699620 88699687 68 - 1.710 1.596 -0.389
ENSG00000158717 E018 36.326667 0.0004231933 2.474877e-02 1.445998e-01 16 88699688 88699732 45 - 1.622 1.508 -0.389
ENSG00000158717 E019 57.113262 0.0002823361 4.398221e-17 9.158829e-15 16 88699733 88700546 814 - 1.456 1.842 1.313
ENSG00000158717 E020 9.826929 0.0015869817 7.686715e-07 3.685114e-05 16 88700547 88700617 71 - 0.593 1.138 2.126
ENSG00000158717 E021 11.148672 0.0013199967 4.061055e-04 7.399627e-03 16 88700618 88700755 138 - 0.814 1.155 1.270
ENSG00000158717 E022 16.677196 0.0008844258 1.401421e-06 6.226049e-05 16 88700756 88700940 185 - 0.927 1.329 1.445
ENSG00000158717 E023 5.043041 0.0028102530 1.481796e-04 3.271354e-03 16 88700941 88700980 40 - 0.361 0.884 2.357
ENSG00000158717 E024 12.472807 0.0011032324 1.553853e-02 1.077265e-01 16 88700981 88701261 281 - 0.960 1.172 0.772
ENSG00000158717 E025 32.614155 0.0005446864 2.619042e-02 1.497778e-01 16 88701262 88701296 35 - 1.580 1.461 -0.407
ENSG00000158717 E026 29.460202 0.0005425672 1.399116e-01 3.978755e-01 16 88701297 88701316 20 - 1.516 1.432 -0.288
ENSG00000158717 E027 48.391385 0.0003119428 8.654192e-03 7.298752e-02 16 88701317 88701418 102 - 1.744 1.629 -0.391
ENSG00000158717 E028 55.808579 0.0003634009 8.948346e-10 7.709586e-08 16 88701419 88702772 1354 - 1.537 1.810 0.927
ENSG00000158717 E029 4.394259 0.0502708690 3.438997e-02 1.771358e-01 16 88702773 88702789 17 - 0.469 0.803 1.460
ENSG00000158717 E030 23.074636 0.0075619969 3.624443e-01 6.516676e-01 16 88702790 88703134 345 - 1.318 1.382 0.222
ENSG00000158717 E031 88.057020 0.0002352650 1.305858e-08 9.099500e-07 16 88703135 88706090 2956 - 1.792 1.986 0.652
ENSG00000158717 E032 19.568724 0.0044324348 1.039158e-04 2.449812e-03 16 88706171 88706211 41 - 1.451 1.177 -0.957
ENSG00000158717 E033 32.335385 0.0249146967 2.648603e-03 3.141627e-02 16 88706212 88706408 197 - 1.642 1.405 -0.813

Help

Please Click HERE to learn more details about the results from DEXseq.