ENSG00000160201

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000291552 ENSG00000160201 No_inf pgKDN_inf U2AF1 protein_coding protein_coding 81.7417 73.78632 78.68223 12.33643 9.376246 0.09267237 8.426921 5.3573030 6.643166 5.3573030 6.6431656 0.3098436 0.07860000 0.049750 0.063650 0.013900 1.00000000 0.02415813 FALSE  
ENST00000380276 ENSG00000160201 No_inf pgKDN_inf U2AF1 protein_coding protein_coding 81.7417 73.78632 78.68223 12.33643 9.376246 0.09267237 16.383329 18.6968974 17.039621 1.2886864 1.9109665 -0.1338307 0.21880000 0.281550 0.227275 -0.054275 0.84644152 0.02415813 FALSE  
ENST00000464750 ENSG00000160201 No_inf pgKDN_inf U2AF1 protein_coding nonsense_mediated_decay 81.7417 73.78632 78.68223 12.33643 9.376246 0.09267237 4.542298 0.8601986 7.349295 0.5247749 1.1236243 3.0801509 0.05773333 0.009775 0.099600 0.089825 0.02415813 0.02415813 FALSE  
ENST00000486519 ENSG00000160201 No_inf pgKDN_inf U2AF1 protein_coding nonsense_mediated_decay 81.7417 73.78632 78.68223 12.33643 9.376246 0.09267237 41.500295 35.0676625 39.905759 8.3160737 5.4611214 0.1864058 0.50194167 0.457900 0.505925 0.048025 0.85220426 0.02415813 FALSE  
ENST00000496462 ENSG00000160201 No_inf pgKDN_inf U2AF1 protein_coding retained_intron 81.7417 73.78632 78.68223 12.33643 9.376246 0.09267237 3.920767 4.7221178 2.916690 0.3282607 0.2861437 -0.6932159 0.05154167 0.070500 0.038375 -0.032125 0.63714643 0.02415813 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000160201 E001 4.3972881 0.0894525487 0.846390805 0.94547122 21 43092956 43093189 234 - 0.752 0.713 -0.157
ENSG00000160201 E002 33.0224162 0.0064674416 0.664780126 0.86063892 21 43093190 43093249 60 - 1.544 1.520 -0.083
ENSG00000160201 E003 0.6080157 0.0172475925 0.657783896 0.85690966 21 43093250 43094470 1221 - 0.239 0.173 -0.583
ENSG00000160201 E004 69.3785398 0.0003203281 0.568656805 0.80601403 21 43094471 43094563 93 - 1.857 1.838 -0.064
ENSG00000160201 E005 96.2009660 0.0001882520 0.650078249 0.85260498 21 43094655 43094788 134 - 1.994 1.981 -0.042
ENSG00000160201 E006 0.8625779 0.0150206748 0.710241715 0.88288818 21 43094789 43095437 649 - 0.239 0.297 0.417
ENSG00000160201 E007 117.3418872 0.0002263607 0.778883485 0.91499838 21 43095438 43095536 99 - 2.069 2.077 0.026
ENSG00000160201 E008 0.1268540 0.0123374774 0.538955267   21 43095537 43095693 157 - 0.000 0.095 10.139
ENSG00000160201 E009 62.6163777 0.0010446090 0.629892199 0.84125679 21 43095694 43095701 8 - 1.793 1.812 0.064
ENSG00000160201 E010 86.1362919 0.0002003098 0.498211992 0.75869771 21 43095702 43095743 42 - 1.929 1.950 0.072
ENSG00000160201 E011 0.7417676 0.0138942295 0.413580161 0.69427318 21 43095744 43096390 647 - 0.173 0.297 1.002
ENSG00000160201 E012 5.0335014 0.0828059794 0.754008195 0.90318788 21 43097622 43100452 2831 - 0.752 0.805 0.213
ENSG00000160201 E013 62.4511849 0.0002714105 0.927189393 0.97834951 21 43100453 43100519 67 - 1.800 1.804 0.013
ENSG00000160201 E014 0.2438580 0.0163596734 1.000000000   21 43100520 43100576 57 - 0.095 0.095 0.002
ENSG00000160201 E015 0.3533378 0.0157821947 0.102991259   21 43100577 43100614 38 - 0.239 0.000 -11.825
ENSG00000160201 E016 0.0000000       21 43100615 43101365 751 -      
ENSG00000160201 E017 22.3297750 0.0006405399 0.370771568 0.65898850 21 43101366 43101432 67 - 1.338 1.394 0.193
ENSG00000160201 E018 0.8890123 0.0121647717 0.004444738 0.04564106 21 43101433 43104314 2882 - 0.000 0.434 12.946
ENSG00000160201 E019 72.0610616 0.0002148166 0.576577835 0.81052750 21 43104315 43104402 88 - 1.873 1.855 -0.062
ENSG00000160201 E020 0.3716209 0.0166962049 0.583517382   21 43104403 43105252 850 - 0.095 0.173 1.002
ENSG00000160201 E021 39.2486407 0.0003407574 0.459996522 0.73151732 21 43107451 43107570 120 - 1.622 1.588 -0.115

Help

Please Click HERE to learn more details about the results from DEXseq.