ENSG00000160255

Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000397852 ENSG00000160255 No_inf pgKDN_inf ITGB2 protein_coding protein_coding 2836.816 2737.117 2668.549 9.028953 6.129369 -0.0366016 864.70840 960.4205 702.73279 14.51672 20.01694 -0.4506844 0.30468333 0.350900 0.263350 -0.08755 1.358598e-07 1.74849e-24 FALSE TRUE
ENST00000397854 ENSG00000160255 No_inf pgKDN_inf ITGB2 protein_coding protein_coding 2836.816 2737.117 2668.549 9.028953 6.129369 -0.0366016 64.24971 150.3959 10.59465 36.01636 10.59465 -3.8260921 0.02301667 0.054925 0.003975 -0.05095 1.188938e-02 1.74849e-24 FALSE TRUE
ENST00000652462 ENSG00000160255 No_inf pgKDN_inf ITGB2 protein_coding protein_coding 2836.816 2737.117 2668.549 9.028953 6.129369 -0.0366016 1745.57367 1408.1438 1854.73091 47.26603 36.02016 0.3974128 0.61510000 0.514450 0.695000 0.18055 7.047050e-15 1.74849e-24 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results from IsoformSwitchAnalyzeR.