ENSG00000160326

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000371897 ENSG00000160326 No_inf pgKDN_inf SLC2A6 protein_coding protein_coding 43.31211 14.05081 55.31008 0.3388235 1.259918 1.976124 20.1652319 5.7792954 27.149577 1.5066967 1.6699934 2.2300013 0.45081667 0.405300 0.490425 0.085125 0.81658594 0.03388258 FALSE TRUE
ENST00000371899 ENSG00000160326 No_inf pgKDN_inf SLC2A6 protein_coding protein_coding 43.31211 14.05081 55.31008 0.3388235 1.259918 1.976124 14.9419439 1.5210425 21.991419 1.5210425 1.4010171 3.8450103 0.28795000 0.115625 0.399150 0.283525 0.03388258 0.03388258 FALSE TRUE
MSTRG.29477.1 ENSG00000160326 No_inf pgKDN_inf SLC2A6 protein_coding   43.31211 14.05081 55.31008 0.3388235 1.259918 1.976124 3.8132608 3.7264292 2.431654 1.3762908 0.9822513 -0.6138014 0.13101667 0.261100 0.043325 -0.217775 0.48205319 0.03388258 TRUE TRUE
MSTRG.29477.9 ENSG00000160326 No_inf pgKDN_inf SLC2A6 protein_coding   43.31211 14.05081 55.31008 0.3388235 1.259918 1.976124 0.3266404 0.9799213 0.000000 0.9799213 0.0000000 -6.6292419 0.02328333 0.069850 0.000000 -0.069850 0.69861112 0.03388258 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000160326 E001 0.2455571 0.0161815419 0.3326768279   9 133470996 133471029 34 - 0.054 0.163 1.783
ENSG00000160326 E002 0.1268540 0.0123131059 0.1257290952   9 133471030 133471086 57 - 0.000 0.163 11.345
ENSG00000160326 E003 0.0000000       9 133471087 133471093 7 -      
ENSG00000160326 E004 0.0000000       9 133471094 133471094 1 -      
ENSG00000160326 E005 0.8285819 0.0148286872 0.1497178439 0.412075494 9 133471095 133471101 7 - 0.284 0.000 -12.365
ENSG00000160326 E006 2.3919440 0.0453498766 0.4333975136 0.710825317 9 133471102 133471124 23 - 0.511 0.373 -0.720
ENSG00000160326 E007 202.8336552 0.0001812735 0.8392166327 0.942353220 9 133471125 133472174 1050 - 2.239 2.244 0.017
ENSG00000160326 E008 12.6386901 0.0011368639 0.0287002161 0.158679391 9 133472175 133472176 2 - 1.114 0.893 -0.818
ENSG00000160326 E009 30.4559809 0.0015275425 0.7306784151 0.892987008 9 133473105 133473250 146 - 1.435 1.415 -0.072
ENSG00000160326 E010 1.2507504 0.0108332094 0.0001375304 0.003083035 9 133473251 133473414 164 - 0.102 0.666 3.783
ENSG00000160326 E011 22.7792311 0.0006281518 0.0748957029 0.279197183 9 133473415 133473600 186 - 1.278 1.399 0.423
ENSG00000160326 E012 1.3509173 0.0102370945 0.0231130297 0.138700669 9 133473601 133473619 19 - 0.220 0.571 2.046
ENSG00000160326 E013 3.0651769 0.0750450089 0.0061273121 0.057373342 9 133473620 133473979 360 - 0.412 0.839 1.899
ENSG00000160326 E014 29.5908924 0.0015027216 0.4066780548 0.689264478 9 133473980 133474088 109 - 1.405 1.458 0.182
ENSG00000160326 E015 38.8627948 0.0004040935 0.6715604974 0.863729337 9 133474961 133475108 148 - 1.538 1.516 -0.077
ENSG00000160326 E016 13.6508880 0.0011714254 0.5365409243 0.785803354 9 133475109 133475113 5 - 1.114 1.059 -0.201
ENSG00000160326 E017 13.1909405 0.0162902438 0.9499965453 0.987074893 9 133475400 133475405 6 - 1.087 1.092 0.018
ENSG00000160326 E018 27.8226638 0.0057143557 0.9698130316 0.993804074 9 133475406 133475496 91 - 1.394 1.391 -0.008
ENSG00000160326 E019 27.3836243 0.0006198162 0.6818039437 0.868278095 9 133475497 133475611 115 - 1.379 1.407 0.095
ENSG00000160326 E020 0.3543453 0.0158041058 0.6801512998   9 133476233 133476236 4 - 0.145 0.000 -11.255
ENSG00000160326 E021 23.6368273 0.0006379186 0.9397184312 0.982891426 9 133476237 133476336 100 - 1.326 1.322 -0.015
ENSG00000160326 E022 0.7183770 0.0140693406 0.7654777174 0.908830200 9 133476337 133476414 78 - 0.220 0.163 -0.539
ENSG00000160326 E023 32.4768870 0.0030527559 0.6614445303 0.858724817 9 133477035 133477241 207 - 1.464 1.437 -0.094
ENSG00000160326 E024 24.4239839 0.0006910121 0.1645329757 0.433798065 9 133478254 133478416 163 - 1.360 1.261 -0.344
ENSG00000160326 E025 2.4915500 0.0066731417 0.1197980221 0.365809573 9 133478417 133478967 551 - 0.545 0.281 -1.465
ENSG00000160326 E026 11.9725844 0.0012730211 0.3846430477 0.670762356 9 133478968 133479141 174 - 1.068 0.983 -0.309

Help

Please Click HERE to learn more details about the results from DEXseq.