ENSG00000160752

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000447866 ENSG00000160752 No_inf pgKDN_inf FDPS protein_coding protein_coding 230.5084 121.5074 264.6184 5.40495 6.07493 1.122805 39.68543 20.21155 46.792129 6.7574567 6.119087 1.2106805 0.17295833 0.170775 0.177025 0.006250 0.88664710 0.02116358 FALSE TRUE
ENST00000467076 ENSG00000160752 No_inf pgKDN_inf FDPS protein_coding protein_coding 230.5084 121.5074 264.6184 5.40495 6.07493 1.122805 88.68114 31.10128 112.720210 5.5302667 4.336188 1.8573646 0.36030000 0.253125 0.427200 0.174075 0.02116358 0.02116358 FALSE TRUE
ENST00000489003 ENSG00000160752 No_inf pgKDN_inf FDPS protein_coding retained_intron 230.5084 121.5074 264.6184 5.40495 6.07493 1.122805 13.74294 11.33315 10.201164 0.8776422 1.391590 -0.1516744 0.06577500 0.094300 0.038550 -0.055750 0.04833704 0.02116358 FALSE TRUE
ENST00000490140 ENSG00000160752 No_inf pgKDN_inf FDPS protein_coding retained_intron 230.5084 121.5074 264.6184 5.40495 6.07493 1.122805 13.00318 12.22749 14.118681 1.3914320 3.764443 0.2073185 0.06540000 0.102625 0.052550 -0.050075 0.39887506 0.02116358 FALSE TRUE
ENST00000492887 ENSG00000160752 No_inf pgKDN_inf FDPS protein_coding retained_intron 230.5084 121.5074 264.6184 5.40495 6.07493 1.122805 11.02661 12.19544 9.133361 2.7193929 3.866308 -0.4167273 0.05708333 0.098450 0.034900 -0.063550 0.47023842 0.02116358 FALSE FALSE
MSTRG.1971.2 ENSG00000160752 No_inf pgKDN_inf FDPS protein_coding   230.5084 121.5074 264.6184 5.40495 6.07493 1.122805 23.76968 11.82621 27.745237 2.9006074 2.697361 1.2295523 0.10159167 0.095975 0.104800 0.008825 0.88944082 0.02116358 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000160752 E001 0.1176306 0.0117860704 1.000000e+00   1 155308748 155308754 7 + 0.067 0.000 -8.422
ENSG00000160752 E002 0.1176306 0.0117860704 1.000000e+00   1 155308755 155308793 39 + 0.067 0.000 -10.791
ENSG00000160752 E003 0.1176306 0.0117860704 1.000000e+00   1 155308794 155308802 9 + 0.067 0.000 -10.791
ENSG00000160752 E004 1.5602849 0.0088141534 4.860849e-01 7.499099e-01 1 155308803 155308853 51 + 0.427 0.317 -0.634
ENSG00000160752 E005 4.3519943 0.0034909277 8.575897e-01 9.502659e-01 1 155308854 155308862 9 + 0.700 0.725 0.103
ENSG00000160752 E006 7.2709860 0.0026497436 4.393616e-01 7.153237e-01 1 155308863 155308865 3 + 0.866 0.949 0.315
ENSG00000160752 E007 14.9640972 0.0009377267 7.645039e-01 9.084105e-01 1 155308866 155308888 23 + 1.186 1.165 -0.075
ENSG00000160752 E008 16.0536944 0.0008427650 7.900261e-01 9.195052e-01 1 155308889 155308892 4 + 1.214 1.196 -0.063
ENSG00000160752 E009 21.1448960 0.0006599096 9.780726e-01 9.968888e-01 1 155308893 155308913 21 + 1.320 1.324 0.016
ENSG00000160752 E010 20.4361404 0.0007082646 7.313386e-01 8.932539e-01 1 155308914 155308915 2 + 1.298 1.324 0.090
ENSG00000160752 E011 35.3097057 0.0004286063 2.265321e-01 5.147364e-01 1 155308916 155308958 43 + 1.555 1.493 -0.212
ENSG00000160752 E012 24.7859904 0.0006014051 1.028431e-01 3.352720e-01 1 155308959 155308965 7 + 1.419 1.317 -0.354
ENSG00000160752 E013 1.4525252 0.0108576501 9.139374e-01 9.728871e-01 1 155308966 155308967 2 + 0.368 0.386 0.103
ENSG00000160752 E014 1.4525252 0.0108576501 9.139374e-01 9.728871e-01 1 155308968 155308969 2 + 0.368 0.386 0.103
ENSG00000160752 E015 3.2639603 0.0346339592 8.377228e-01 9.418553e-01 1 155308970 155308983 14 + 0.621 0.588 -0.145
ENSG00000160752 E016 3.2639603 0.0346339592 8.377228e-01 9.418553e-01 1 155308984 155308984 1 + 0.621 0.588 -0.145
ENSG00000160752 E017 6.6880392 0.0574872701 3.995529e-01 6.833731e-01 1 155308985 155309076 92 + 0.825 0.931 0.407
ENSG00000160752 E018 2.0966142 0.0196196116 2.827072e-02 1.572703e-01 1 155309077 155309178 102 + 0.336 0.662 1.618
ENSG00000160752 E019 6.5991707 0.0120981478 3.797473e-02 1.880260e-01 1 155309179 155309752 574 + 0.767 0.999 0.889
ENSG00000160752 E020 0.4980357 0.0304094203 8.315739e-02   1 155309753 155309788 36 + 0.067 0.317 2.688
ENSG00000160752 E021 7.7545777 0.0024624247 4.971353e-01 7.578874e-01 1 155309789 155309965 177 + 0.895 0.966 0.269
ENSG00000160752 E022 0.7364156 0.0594611481 3.845516e-01 6.707113e-01 1 155309966 155310042 77 + 0.176 0.317 1.103
ENSG00000160752 E023 12.7082492 0.0013403374 6.054277e-01 8.280453e-01 1 155310043 155310063 21 + 1.098 1.143 0.165
ENSG00000160752 E024 98.9646252 0.0003177963 2.896283e-01 5.832909e-01 1 155310064 155310205 142 + 1.985 1.954 -0.103
ENSG00000160752 E025 0.8700651 0.1563979314 5.952310e-02 2.446631e-01 1 155310336 155310453 118 + 0.125 0.446 2.425
ENSG00000160752 E026 87.3853042 0.0002666268 2.761563e-02 1.550119e-01 1 155312255 155312395 141 + 1.944 1.872 -0.240
ENSG00000160752 E027 11.4730661 0.0317228598 7.313573e-02 2.747633e-01 1 155312396 155312979 584 + 0.994 1.196 0.732
ENSG00000160752 E028 0.0000000       1 155317941 155318021 81 +      
ENSG00000160752 E029 0.0000000       1 155318169 155318174 6 +      
ENSG00000160752 E030 0.0000000       1 155318175 155318187 13 +      
ENSG00000160752 E031 0.0000000       1 155318188 155318291 104 +      
ENSG00000160752 E032 15.2918294 0.0009425994 2.468819e-10 2.348382e-08 1 155318292 155318664 373 + 0.971 1.440 1.669
ENSG00000160752 E033 52.1027382 0.0003474544 1.729709e-01 4.458949e-01 1 155318665 155318718 54 + 1.718 1.661 -0.193
ENSG00000160752 E034 77.2558184 0.0002431421 3.689999e-02 1.849622e-01 1 155318719 155318753 35 + 1.891 1.819 -0.243
ENSG00000160752 E035 7.7868576 0.0024713337 1.480162e-01 4.096422e-01 1 155318754 155318855 102 + 0.866 1.014 0.556
ENSG00000160752 E036 131.9114192 0.0001337490 2.406694e-01 5.298932e-01 1 155318856 155318928 73 + 2.107 2.080 -0.094
ENSG00000160752 E037 72.8949189 0.0004397885 6.130813e-01 8.318104e-01 1 155319611 155319654 44 + 1.837 1.858 0.071
ENSG00000160752 E038 33.3694579 0.0007209428 3.799611e-02 1.880760e-01 1 155319655 155319688 34 + 1.471 1.583 0.386
ENSG00000160752 E039 6.1496488 0.0351375694 3.548303e-03 3.910078e-02 1 155319689 155319793 105 + 0.670 1.043 1.451
ENSG00000160752 E040 1.5896139 0.0093388605 2.928576e-01 5.864358e-01 1 155319794 155319825 32 + 0.336 0.499 0.881
ENSG00000160752 E041 0.0000000       1 155319826 155319856 31 +      
ENSG00000160752 E042 0.0000000       1 155319857 155319928 72 +      
ENSG00000160752 E043 0.0000000       1 155320409 155320666 258 +      

Help

Please Click HERE to learn more details about the results from DEXseq.