ENSG00000161013

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000292591 ENSG00000161013 No_inf pgKDN_inf MGAT4B protein_coding protein_coding 78.0535 95.53053 61.40344 1.864021 0.8902725 -0.6375585 28.925310 30.267059 28.239329 3.350107 1.566778 -0.10000848 0.3820250 0.318600 0.460800 0.142200 0.26024204 0.01693761 FALSE TRUE
ENST00000518778 ENSG00000161013 No_inf pgKDN_inf MGAT4B protein_coding protein_coding 78.0535 95.53053 61.40344 1.864021 0.8902725 -0.6375585 8.806484 12.094632 12.592059 1.464433 1.057744 0.05810021 0.1183833 0.126475 0.204725 0.078250 0.37426140 0.01693761 FALSE TRUE
ENST00000519836 ENSG00000161013 No_inf pgKDN_inf MGAT4B protein_coding protein_coding 78.0535 95.53053 61.40344 1.864021 0.8902725 -0.6375585 8.782354 7.783747 8.365538 3.032124 2.818803 0.10386478 0.1161083 0.080225 0.135300 0.055075 0.87621167 0.01693761 FALSE TRUE
ENST00000520969 ENSG00000161013 No_inf pgKDN_inf MGAT4B protein_coding protein_coding 78.0535 95.53053 61.40344 1.864021 0.8902725 -0.6375585 12.169118 17.513531 2.207542 2.045218 2.207542 -2.98226044 0.1449667 0.183625 0.036625 -0.147000 0.01693761 0.01693761 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000161013 E001 0.7538163 0.2915438420 0.4054051986 0.688188467 5 179797597 179797609 13 - 0.116 0.296 1.666
ENSG00000161013 E002 20.2071797 0.0014128736 0.4973292155 0.757965582 5 179797610 179797670 61 - 1.340 1.295 -0.160
ENSG00000161013 E003 81.7099068 0.0002184584 0.2087026465 0.492740699 5 179797671 179797883 213 - 1.929 1.887 -0.143
ENSG00000161013 E004 43.3132349 0.0003380049 0.6836343097 0.869048786 5 179797884 179797945 62 - 1.644 1.625 -0.065
ENSG00000161013 E005 71.0909605 0.0029789884 0.2364061842 0.525431339 5 179797946 179798068 123 - 1.874 1.824 -0.167
ENSG00000161013 E006 2.1303798 0.0446577994 0.0811702955 0.292734117 5 179798106 179798164 59 - 0.284 0.572 1.565
ENSG00000161013 E007 72.3958067 0.0004619389 0.0820482874 0.294777000 5 179798165 179798277 113 - 1.889 1.827 -0.212
ENSG00000161013 E008 47.3790550 0.0003284995 0.2153335252 0.501118639 5 179798347 179798406 60 - 1.635 1.690 0.187
ENSG00000161013 E009 42.7714345 0.0003307138 0.0338575664 0.175129374 5 179798407 179798434 28 - 1.560 1.661 0.343
ENSG00000161013 E010 1.4770461 0.0101529529 0.8427253802 0.943741838 5 179798504 179798512 9 - 0.404 0.374 -0.172
ENSG00000161013 E011 58.2007744 0.0002845966 0.0758983582 0.281524246 5 179798513 179798576 64 - 1.711 1.783 0.243
ENSG00000161013 E012 30.5425985 0.0005711496 0.5225004736 0.775952982 5 179798577 179798591 15 - 1.462 1.497 0.120
ENSG00000161013 E013 2.6491632 0.0058920157 0.0026227134 0.031184617 5 179798592 179798835 244 - 0.208 0.672 2.591
ENSG00000161013 E014 87.8572731 0.0001653795 0.5253256841 0.778141645 5 179798928 179799064 137 - 1.921 1.941 0.068
ENSG00000161013 E015 50.3912486 0.0003165770 0.8046900919 0.927702885 5 179799065 179799121 57 - 1.690 1.700 0.035
ENSG00000161013 E016 1.5902171 0.2549681474 0.4763411101 0.742862183 5 179799122 179799175 54 - 0.499 0.336 -0.882
ENSG00000161013 E017 38.8952601 0.0018530855 0.9729266803 0.994971986 5 179799203 179799250 48 - 1.585 1.587 0.005
ENSG00000161013 E018 41.9531851 0.0005539404 0.1947147058 0.474697959 5 179799251 179799295 45 - 1.578 1.640 0.211
ENSG00000161013 E019 31.5893166 0.0005128710 0.0924986215 0.315825027 5 179799296 179799307 12 - 1.438 1.531 0.317
ENSG00000161013 E020 27.7554068 0.0050562092 0.1031078176 0.335587293 5 179799308 179799310 3 - 1.376 1.481 0.362
ENSG00000161013 E021 30.7066018 0.0005830153 0.1397211550 0.397545082 5 179799506 179799511 6 - 1.433 1.515 0.282
ENSG00000161013 E022 58.3458802 0.0002478987 0.4292309437 0.707584527 5 179799512 179799636 125 - 1.739 1.770 0.106
ENSG00000161013 E023 2.5744787 0.0732437395 0.4827835265 0.747673321 5 179799637 179799723 87 - 0.610 0.498 -0.519
ENSG00000161013 E024 4.7139282 0.0037482526 0.3592831071 0.648686901 5 179799724 179799953 230 - 0.671 0.783 0.458
ENSG00000161013 E025 24.2940739 0.0008261020 0.7167056570 0.885784788 5 179799954 179799979 26 - 1.403 1.380 -0.078
ENSG00000161013 E026 46.8919493 0.0004026948 0.1150694466 0.357518033 5 179799980 179800068 89 - 1.708 1.638 -0.238
ENSG00000161013 E027 40.8499668 0.0004392962 0.0720644026 0.272250709 5 179800184 179800259 76 - 1.659 1.573 -0.290
ENSG00000161013 E028 1.3800918 0.1388932077 0.2204723173 0.507401492 5 179800260 179800431 172 - 0.208 0.440 1.512
ENSG00000161013 E029 42.7536265 0.0071162289 0.2751964395 0.568697834 5 179800484 179800597 114 - 1.665 1.602 -0.213
ENSG00000161013 E030 27.6817684 0.0061947399 0.8075714208 0.929002215 5 179800907 179800937 31 - 1.433 1.449 0.052
ENSG00000161013 E031 21.1314482 0.0035138612 0.8351915081 0.940694364 5 179800938 179800953 16 - 1.322 1.336 0.048
ENSG00000161013 E032 0.8626082 0.0650683012 0.8292023844 0.938231630 5 179800954 179800997 44 - 0.284 0.250 -0.242
ENSG00000161013 E033 24.9032717 0.0011077221 0.5178626555 0.773267012 5 179801334 179801374 41 - 1.423 1.384 -0.137
ENSG00000161013 E034 41.2169383 0.0013313870 0.8014660165 0.925920937 5 179801375 179801467 93 - 1.619 1.606 -0.043
ENSG00000161013 E035 0.6237874 0.1773204530 0.4497434727 0.723321125 5 179801468 179801553 86 - 0.116 0.250 1.343
ENSG00000161013 E036 54.8902371 0.0002636541 0.0535578826 0.230423647 5 179801554 179801692 139 - 1.780 1.702 -0.267
ENSG00000161013 E037 18.4867417 0.0007374831 0.0044347585 0.045567587 5 179801693 179801694 2 - 1.387 1.194 -0.676
ENSG00000161013 E038 0.1170040 0.0117130905 0.3352067846   5 179801695 179801719 25 - 0.116 0.000 -9.808
ENSG00000161013 E039 24.0755142 0.0005654792 0.0443109533 0.205852700 5 179801784 179801806 23 - 1.457 1.336 -0.421
ENSG00000161013 E040 36.2969089 0.0004565738 0.0864387216 0.304625327 5 179801807 179801969 163 - 1.609 1.523 -0.293
ENSG00000161013 E041 9.2277424 0.0014975915 0.0179202334 0.117996565 5 179801970 179802312 343 - 0.835 1.069 0.876
ENSG00000161013 E042 10.6009995 0.0089330443 0.0196260983 0.125550229 5 179802313 179802803 491 - 0.890 1.123 0.861
ENSG00000161013 E043 5.5076189 0.0024719915 0.0095583607 0.078067160 5 179802804 179802951 148 - 0.576 0.893 1.302
ENSG00000161013 E044 2.7398520 0.0177608094 0.2746915300 0.568152015 5 179802952 179803030 79 - 0.454 0.615 0.758
ENSG00000161013 E045 1.7414833 0.0103283096 0.4287079655 0.707136076 5 179803031 179803059 29 - 0.348 0.470 0.665
ENSG00000161013 E046 2.9598490 0.0053597970 0.7790198961 0.914998379 5 179803413 179803776 364 - 0.610 0.572 -0.172
ENSG00000161013 E047 8.5211593 0.0016630524 0.0001715783 0.003689754 5 179804941 179805385 445 - 0.671 1.076 1.565
ENSG00000161013 E048 0.8709474 0.0124760786 0.5732223964 0.808762558 5 179806184 179806192 9 - 0.208 0.295 0.665
ENSG00000161013 E049 1.8864021 0.0073195560 0.0304573643 0.164206861 5 179806193 179806486 294 - 0.208 0.548 2.043
ENSG00000161013 E050 23.5031411 0.0035593673 0.1717675558 0.444407145 5 179806487 179806952 466 - 1.428 1.340 -0.308

Help

Please Click HERE to learn more details about the results from DEXseq.