ENSG00000161813

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000347328 ENSG00000161813 No_inf pgKDN_inf LARP4 protein_coding protein_coding 9.041786 6.090089 10.87122 0.3065666 0.6551737 0.8349375 1.7474927 3.5447931 0.9215156 0.3135949 0.9215156 -1.932114 0.25354167 0.583175 0.099150 -0.484025 0.02068226 0.02068226 FALSE TRUE
ENST00000398473 ENSG00000161813 No_inf pgKDN_inf LARP4 protein_coding protein_coding 9.041786 6.090089 10.87122 0.3065666 0.6551737 0.8349375 2.1426463 0.4979526 4.4291972 0.2895668 2.5995913 3.127533 0.22293333 0.088750 0.400375 0.311625 0.90442863 0.02068226 FALSE TRUE
ENST00000429001 ENSG00000161813 No_inf pgKDN_inf LARP4 protein_coding protein_coding 9.041786 6.090089 10.87122 0.3065666 0.6551737 0.8349375 1.4722702 0.0000000 0.0000000 0.0000000 0.0000000 0.000000 0.13892500 0.000000 0.000000 0.000000   0.02068226 FALSE TRUE
ENST00000520064 ENSG00000161813 No_inf pgKDN_inf LARP4 protein_coding protein_coding 9.041786 6.090089 10.87122 0.3065666 0.6551737 0.8349375 1.2605840 1.0658804 2.2003755 0.6608627 0.9296969 1.038774 0.13987500 0.178200 0.198575 0.020375 0.88379713 0.02068226 FALSE TRUE
MSTRG.6480.7 ENSG00000161813 No_inf pgKDN_inf LARP4 protein_coding   9.041786 6.090089 10.87122 0.3065666 0.6551737 0.8349375 0.4298731 0.0000000 1.2896194 0.0000000 1.2896194 7.021945 0.03680833 0.000000 0.110425 0.110425 0.91125212 0.02068226 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000161813 E001 0.0000000       12 50392383 50392588 206 +      
ENSG00000161813 E002 0.0000000       12 50400809 50400856 48 +      
ENSG00000161813 E003 0.0000000       12 50400857 50400884 28 +      
ENSG00000161813 E004 0.0000000       12 50400885 50400888 4 +      
ENSG00000161813 E005 0.0000000       12 50400889 50400894 6 +      
ENSG00000161813 E006 0.0000000       12 50400895 50400895 1 +      
ENSG00000161813 E007 0.1187032 0.011766028 1.000000000   12 50400896 50400907 12 + 0.069 0.000 -9.767
ENSG00000161813 E008 1.0715964 0.012461367 0.084854231 0.30102796 12 50400908 50400928 21 + 0.377 0.129 -1.999
ENSG00000161813 E009 1.0715964 0.012461367 0.084854231 0.30102796 12 50400929 50400931 3 + 0.377 0.129 -1.999
ENSG00000161813 E010 1.0715964 0.012461367 0.084854231 0.30102796 12 50400932 50400949 18 + 0.377 0.129 -1.999
ENSG00000161813 E011 1.0715964 0.012461367 0.084854231 0.30102796 12 50400950 50400955 6 + 0.377 0.129 -1.999
ENSG00000161813 E012 1.5513761 0.008831289 0.089166908 0.30996635 12 50400956 50400984 29 + 0.463 0.229 -1.458
ENSG00000161813 E013 1.5598703 0.008551492 0.289847303 0.58352461 12 50400985 50401000 16 + 0.436 0.309 -0.736
ENSG00000161813 E014 1.0885847 0.019894805 0.825156890 0.93667021 12 50401001 50401028 28 + 0.309 0.309 0.001
ENSG00000161813 E015 0.0000000       12 50401108 50401192 85 +      
ENSG00000161813 E016 0.0000000       12 50401193 50401221 29 +      
ENSG00000161813 E017 0.0000000       12 50401222 50401281 60 +      
ENSG00000161813 E018 0.0000000       12 50402675 50402813 139 +      
ENSG00000161813 E019 0.4832417 0.022451509 0.645795942   12 50412405 50412453 49 + 0.182 0.129 -0.584
ENSG00000161813 E020 0.0000000       12 50412454 50412457 4 +      
ENSG00000161813 E021 0.0000000       12 50415712 50415831 120 +      
ENSG00000161813 E022 0.2357071 0.015712269 0.489789643   12 50416346 50416434 89 + 0.129 0.000 -12.862
ENSG00000161813 E023 0.1272623 0.012319946 0.305277969   12 50420788 50420887 100 + 0.000 0.129 12.540
ENSG00000161813 E024 0.8443834 0.012601636 0.646004802 0.85021097 12 50427762 50427764 3 + 0.271 0.229 -0.321
ENSG00000161813 E025 3.9759517 0.003755524 0.246542239 0.53715499 12 50427765 50427909 145 + 0.712 0.615 -0.414
ENSG00000161813 E026 0.0000000       12 50428917 50428934 18 +      
ENSG00000161813 E027 3.6382279 0.003808299 0.983589994 0.99869026 12 50428935 50429090 156 + 0.632 0.682 0.213
ENSG00000161813 E028 0.0000000       12 50429091 50429091 1 +      
ENSG00000161813 E029 1.3527998 0.026459875 0.249006980 0.53985378 12 50430495 50430497 3 + 0.271 0.488 1.264
ENSG00000161813 E030 1.8349081 0.036509099 0.461937765 0.73251063 12 50430498 50430570 73 + 0.377 0.535 0.808
ENSG00000161813 E031 5.2953995 0.003900913 0.181632475 0.45766788 12 50435488 50435624 137 + 0.815 0.712 -0.414
ENSG00000161813 E032 5.6773773 0.002632640 0.479710610 0.74532355 12 50437735 50437838 104 + 0.815 0.792 -0.092
ENSG00000161813 E033 3.1299389 0.004715727 0.287015745 0.58040220 12 50440439 50440478 40 + 0.632 0.535 -0.440
ENSG00000161813 E034 3.8582002 0.019918433 0.324285457 0.61669235 12 50440479 50440549 71 + 0.697 0.615 -0.353
ENSG00000161813 E035 2.6766274 0.006826858 0.697778213 0.87664546 12 50441590 50441643 54 + 0.512 0.615 0.470
ENSG00000161813 E036 5.7398685 0.002577783 0.002156759 0.02700782 12 50453460 50453672 213 + 0.899 0.576 -1.321
ENSG00000161813 E037 5.1603987 0.003318591 0.024949085 0.14519417 12 50454314 50454417 104 + 0.838 0.615 -0.917
ENSG00000161813 E038 0.9900549 0.013401702 0.146829097 0.40790322 12 50454418 50454962 545 + 0.182 0.436 1.738
ENSG00000161813 E039 9.3045430 0.019443846 0.381440664 0.66785686 12 50461135 50461347 213 + 1.007 0.969 -0.142
ENSG00000161813 E040 0.4993265 0.015314540 0.125938497   12 50461348 50461487 140 + 0.069 0.309 2.586
ENSG00000161813 E041 4.5853064 0.036998588 0.391705351 0.67679758 12 50462582 50462630 49 + 0.754 0.682 -0.295
ENSG00000161813 E042 8.4553584 0.001662484 0.227685240 0.51611717 12 50466959 50467120 162 + 0.977 0.918 -0.221
ENSG00000161813 E043 7.8776492 0.001930036 0.808207379 0.92917694 12 50473415 50473536 122 + 0.917 0.953 0.132
ENSG00000161813 E044 7.3949995 0.002546504 0.698267033 0.87688214 12 50473999 50474107 109 + 0.899 0.918 0.071
ENSG00000161813 E045 5.6300458 0.002896903 0.130501251 0.38327297 12 50474108 50474167 60 + 0.712 0.935 0.875
ENSG00000161813 E046 181.5587670 0.023882603 0.023619146 0.14051446 12 50475526 50480004 4479 + 2.192 2.319 0.423

Help

Please Click HERE to learn more details about the results from DEXseq.