ENSG00000162585

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000378546 ENSG00000162585 No_inf pgKDN_inf FAAP20 protein_coding protein_coding 53.91389 52.82772 50.73458 1.195911 0.8774504 -0.05831432 36.570928 32.633226 35.433193 3.7732618 2.4922341 0.1187249 0.67594167 0.614950 0.696800 0.081850 0.76933056 0.03615882 FALSE  
ENST00000400919 ENSG00000162585 No_inf pgKDN_inf FAAP20 protein_coding protein_coding 53.91389 52.82772 50.73458 1.195911 0.8774504 -0.05831432 3.026357 3.328744 2.192056 0.6852662 0.7440479 -0.6004548 0.05562500 0.063350 0.042700 -0.020650 0.83537059 0.03615882 FALSE  
ENST00000476803 ENSG00000162585 No_inf pgKDN_inf FAAP20 protein_coding protein_coding_CDS_not_defined 53.91389 52.82772 50.73458 1.195911 0.8774504 -0.05831432 4.301492 6.270935 3.095523 3.0960546 1.5867562 -1.0161433 0.08110833 0.121175 0.062300 -0.058875 0.87257236 0.03615882 FALSE  
MSTRG.96.12 ENSG00000162585 No_inf pgKDN_inf FAAP20 protein_coding   53.91389 52.82772 50.73458 1.195911 0.8774504 -0.05831432 1.595834 0.000000 3.931848 0.0000000 1.8260320 8.6227282 0.03053333 0.000000 0.077275 0.077275 0.03615882 0.03615882 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000162585 E001 0.4990396 0.4276799700 6.873201e-01   1 2184461 2184463 3 - 0.107 0.216 1.213
ENSG00000162585 E002 0.6255466 0.1638164802 3.420522e-01 6.334487e-01 1 2184464 2184477 14 - 0.107 0.270 1.627
ENSG00000162585 E003 4.3089502 0.0374166126 9.150204e-01 9.733292e-01 1 2184478 2185174 697 - 0.714 0.724 0.042
ENSG00000162585 E004 0.0000000       1 2185175 2185230 56 -      
ENSG00000162585 E005 2.1321792 0.0068982602 2.436398e-02 1.431580e-01 1 2185231 2185513 283 - 0.264 0.603 1.849
ENSG00000162585 E006 1.8714545 0.0074584552 1.786658e-01 4.535643e-01 1 2186004 2186249 246 - 0.325 0.527 1.086
ENSG00000162585 E007 6.6681330 0.0343688423 6.950438e-01 8.754027e-01 1 2186838 2187206 369 - 0.853 0.897 0.167
ENSG00000162585 E008 0.8805145 0.0126049167 1.003892e-01 3.308838e-01 1 2187207 2187292 86 - 0.107 0.360 2.212
ENSG00000162585 E009 0.2533610 0.0162221262 3.427679e-01   1 2189544 2189547 4 - 0.000 0.155 12.108
ENSG00000162585 E010 0.3719991 0.0168231073 7.540881e-01   1 2189548 2189560 13 - 0.107 0.155 0.627
ENSG00000162585 E011 0.4890031 0.0159549573 7.990755e-01   1 2189561 2189568 8 - 0.192 0.155 -0.373
ENSG00000162585 E012 0.7420172 0.1112363117 6.464603e-01 8.503871e-01 1 2189569 2189575 7 - 0.192 0.270 0.627
ENSG00000162585 E013 1.1048231 0.0152849416 9.572554e-01 9.898200e-01 1 2189576 2189579 4 - 0.325 0.317 -0.051
ENSG00000162585 E014 21.3926174 0.0009354690 7.368047e-01 8.956641e-01 1 2189580 2189712 133 - 1.357 1.335 -0.073
ENSG00000162585 E015 24.2433971 0.0006998354 9.838506e-01 9.986907e-01 1 2189713 2189781 69 - 1.397 1.396 -0.005
ENSG00000162585 E016 24.5297006 0.0007025808 6.039228e-07 2.953035e-05 1 2189782 2191900 2119 - 1.198 1.505 1.069
ENSG00000162585 E017 11.7602109 0.0184332827 1.978427e-01 4.792712e-01 1 2191901 2192646 746 - 1.020 1.150 0.471
ENSG00000162585 E018 4.5637874 0.0032754303 7.099313e-01 8.826632e-01 1 2192647 2192844 198 - 0.714 0.758 0.180
ENSG00000162585 E019 4.4555620 0.0243430538 4.036245e-01 6.865381e-01 1 2192845 2192975 131 - 0.665 0.774 0.450
ENSG00000162585 E020 3.3838079 0.0542878870 1.461297e-02 1.032267e-01 1 2192976 2193638 663 - 0.379 0.758 1.764
ENSG00000162585 E021 79.9540082 0.0002905077 9.223241e-02 3.154000e-01 1 2193639 2193910 272 - 1.930 1.881 -0.164
ENSG00000162585 E022 22.8902452 0.0006107940 4.103946e-02 1.966263e-01 1 2193998 2194027 30 - 1.439 1.318 -0.419
ENSG00000162585 E023 31.2310452 0.0156622816 7.774776e-03 6.774229e-02 1 2194028 2194133 106 - 1.599 1.418 -0.621
ENSG00000162585 E024 2.3491895 0.0062531924 5.538748e-01 7.968579e-01 1 2194134 2194213 80 - 0.470 0.554 0.405
ENSG00000162585 E025 15.0125525 0.0178484127 5.775002e-02 2.404423e-01 1 2194688 2194807 120 - 1.287 1.123 -0.584
ENSG00000162585 E026 0.4996088 0.0152334103 4.587361e-01   1 2198007 2198062 56 - 0.107 0.216 1.212
ENSG00000162585 E027 0.6267451 0.0147344221 2.780187e-01 5.712470e-01 1 2198063 2198142 80 - 0.107 0.270 1.627
ENSG00000162585 E028 0.2542726 0.2457358735 4.036955e-01   1 2198143 2198753 611 - 0.000 0.155 11.772
ENSG00000162585 E029 0.7331709 0.0145215026 7.537477e-01 9.031185e-01 1 2198754 2201049 2296 - 0.264 0.216 -0.373
ENSG00000162585 E030 0.2543986 0.0159715565 3.434484e-01   1 2201050 2201225 176 - 0.000 0.155 12.108
ENSG00000162585 E031 0.1272623 0.0123275323 6.930173e-01   1 2203436 2203563 128 - 0.000 0.085 11.194
ENSG00000162585 E032 0.1268540 0.0126118815 6.926578e-01   1 2203564 2203630 67 - 0.000 0.085 11.194
ENSG00000162585 E033 0.0000000       1 2203631 2203882 252 -      
ENSG00000162585 E034 0.2541163 0.0161342882 3.429455e-01   1 2206305 2206424 120 - 0.000 0.155 12.108
ENSG00000162585 E035 0.2452102 0.0164162708 8.413882e-01   1 2206515 2206667 153 - 0.107 0.085 -0.373
ENSG00000162585 E036 0.1271363 0.0123577078 6.929691e-01   1 2207556 2207733 178 - 0.000 0.085 11.194
ENSG00000162585 E037 0.6341407 0.0152747482 4.059602e-02 1.954567e-01 1 2212171 2212371 201 - 0.000 0.317 13.265
ENSG00000162585 E038 0.8521289 0.0139921154 4.764978e-01 7.430048e-01 1 2212372 2212458 87 - 0.325 0.216 -0.788
ENSG00000162585 E039 0.2543986 0.0159715565 3.434484e-01   1 2212549 2212720 172 - 0.000 0.155 12.108

Help

Please Click HERE to learn more details about the results from DEXseq.