ENSG00000162885

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000366600 ENSG00000162885 No_inf pgKDN_inf B3GALNT2 protein_coding protein_coding 18.03039 14.06219 21.48485 0.3404025 0.4388255 0.6111444 13.8832302 10.0698776 16.803720 0.3071866 0.3971056 0.7381608 0.76574167 0.716500 0.782275 0.065775 6.929167e-01 3.728563e-05 FALSE TRUE
ENST00000461994 ENSG00000162885 No_inf pgKDN_inf B3GALNT2 protein_coding retained_intron 18.03039 14.06219 21.48485 0.3404025 0.4388255 0.6111444 0.8781636 1.9556571 0.000000 0.3308504 0.0000000 -7.6188679 0.05785833 0.138825 0.000000 -0.138825 3.728563e-05 3.728563e-05   FALSE
ENST00000494378 ENSG00000162885 No_inf pgKDN_inf B3GALNT2 protein_coding protein_coding_CDS_not_defined 18.03039 14.06219 21.48485 0.3404025 0.4388255 0.6111444 0.9418125 0.9056781 1.080496 0.1396290 0.1830451 0.2520715 0.05323333 0.064650 0.050225 -0.014425 8.790297e-01 3.728563e-05 TRUE FALSE
MSTRG.2931.1 ENSG00000162885 No_inf pgKDN_inf B3GALNT2 protein_coding   18.03039 14.06219 21.48485 0.3404025 0.4388255 0.6111444 1.3775942 0.7279289 2.482367 0.3065642 0.3011397 1.7559626 0.07310000 0.051400 0.116350 0.064950 5.931488e-01 3.728563e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000162885 E001 0.3516386 0.0191228651 2.207925e-01   1 235447165 235447189 25 - 0.202 0.000 -10.305
ENSG00000162885 E002 98.1468041 0.0001953647 2.306157e-02 1.385599e-01 1 235447190 235448250 1061 - 1.969 2.017 0.164
ENSG00000162885 E003 3.6647604 0.0040189277 4.075646e-01 6.900514e-01 1 235448251 235448424 174 - 0.619 0.720 0.426
ENSG00000162885 E004 0.0000000       1 235448425 235449090 666 -      
ENSG00000162885 E005 0.0000000       1 235449091 235449154 64 -      
ENSG00000162885 E006 0.0000000       1 235449155 235449727 573 -      
ENSG00000162885 E007 0.0000000       1 235449728 235450239 512 -      
ENSG00000162885 E008 0.0000000       1 235450240 235450340 101 -      
ENSG00000162885 E009 0.0000000       1 235450341 235451374 1034 -      
ENSG00000162885 E010 3.2904129 0.0549667493 6.518635e-01 8.533607e-01 1 235453090 235453146 57 - 0.598 0.666 0.297
ENSG00000162885 E011 0.0000000       1 235454021 235454155 135 -      
ENSG00000162885 E012 12.5598796 0.0022195690 1.155373e-01 3.583367e-01 1 235454156 235454286 131 - 1.177 1.042 -0.487
ENSG00000162885 E013 6.4154022 0.0022809627 4.332528e-01 7.107417e-01 1 235454287 235454315 29 - 0.898 0.810 -0.341
ENSG00000162885 E014 13.4604398 0.0014917297 6.256066e-01 8.389419e-01 1 235455559 235455684 126 - 1.171 1.128 -0.153
ENSG00000162885 E015 0.0000000       1 235457166 235457251 86 -      
ENSG00000162885 E016 16.1822250 0.0008615982 5.423449e-02 2.318367e-01 1 235458603 235458786 184 - 1.283 1.138 -0.513
ENSG00000162885 E017 1.7361064 0.0474750691 7.527071e-02 2.801111e-01 1 235463458 235464895 1438 - 0.298 0.572 1.466
ENSG00000162885 E018 1.4766404 0.0101762060 1.850241e-01 4.625732e-01 1 235464896 235465635 740 - 0.298 0.495 1.104
ENSG00000162885 E019 8.2042091 0.0017916692 9.152123e-02 3.141415e-01 1 235465636 235465714 79 - 1.020 0.849 -0.645
ENSG00000162885 E020 7.1600043 0.0021191204 7.660886e-01 9.090918e-01 1 235470850 235470960 111 - 0.920 0.885 -0.132
ENSG00000162885 E021 7.8247687 0.0026963466 2.116185e-01 4.966464e-01 1 235478908 235480053 1146 - 0.887 1.004 0.438
ENSG00000162885 E022 5.8450563 0.0025198361 7.250842e-01 8.896174e-01 1 235480054 235480103 50 - 0.815 0.849 0.133
ENSG00000162885 E023 5.6171843 0.0025301525 3.726348e-01 6.605214e-01 1 235480104 235480149 46 - 0.774 0.867 0.367
ENSG00000162885 E024 13.0344781 0.0010104656 4.128051e-01 6.937842e-01 1 235484322 235484515 194 - 1.116 1.175 0.211
ENSG00000162885 E025 4.8681576 0.0031706182 1.745370e-06 7.573195e-05 1 235484516 235485264 749 - 0.444 1.004 2.355
ENSG00000162885 E026 7.3412728 0.0326843787 6.869118e-02 2.646832e-01 1 235489168 235489268 101 - 0.995 0.767 -0.873
ENSG00000162885 E027 8.4137249 0.0065371051 2.115538e-02 1.315387e-01 1 235494681 235494828 148 - 1.052 0.810 -0.912
ENSG00000162885 E028 1.4132210 0.0093384567 1.328326e-03 1.865998e-02 1 235496186 235496308 123 - 0.528 0.000 -14.191
ENSG00000162885 E029 0.0000000       1 235498719 235498827 109 -      
ENSG00000162885 E030 6.8538938 0.0021644075 4.104898e-02 1.966370e-01 1 235504141 235504452 312 - 0.968 0.744 -0.867

Help

Please Click HERE to learn more details about the results from DEXseq.