ENSG00000162910

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000295008 ENSG00000162910 No_inf pgKDN_inf MRPL55 protein_coding protein_coding 56.93103 69.15787 47.7537 14.25613 2.177716 -0.5341876 7.128055 0.9818326 15.928502 0.9818326 3.197880 4.0062756 0.14863333 0.023325 0.333300 0.309975 0.001617414 0.001617414 FALSE TRUE
ENST00000336520 ENSG00000162910 No_inf pgKDN_inf MRPL55 protein_coding protein_coding 56.93103 69.15787 47.7537 14.25613 2.177716 -0.5341876 10.397820 10.5348198 6.240254 2.5259762 2.495907 -0.7545476 0.18366667 0.161050 0.129050 -0.032000 0.845367248 0.001617414 FALSE TRUE
ENST00000348259 ENSG00000162910 No_inf pgKDN_inf MRPL55 protein_coding protein_coding 56.93103 69.15787 47.7537 14.25613 2.177716 -0.5341876 5.408155 1.5685378 7.225212 1.5685378 2.989336 2.1964466 0.11184167 0.033300 0.154050 0.120750 0.218159177 0.001617414 FALSE TRUE
ENST00000366735 ENSG00000162910 No_inf pgKDN_inf MRPL55 protein_coding protein_coding 56.93103 69.15787 47.7537 14.25613 2.177716 -0.5341876 4.599892 6.4491915 2.620924 1.4455298 1.559496 -1.2957841 0.08453333 0.110975 0.055950 -0.055025 0.611133225 0.001617414 FALSE TRUE
ENST00000366746 ENSG00000162910 No_inf pgKDN_inf MRPL55 protein_coding protein_coding 56.93103 69.15787 47.7537 14.25613 2.177716 -0.5341876 4.133885 7.6140115 1.815874 3.5300168 1.132347 -2.0619630 0.07648333 0.130700 0.039025 -0.091675 0.743744582 0.001617414 FALSE TRUE
ENST00000465268 ENSG00000162910 No_inf pgKDN_inf MRPL55 protein_coding retained_intron 56.93103 69.15787 47.7537 14.25613 2.177716 -0.5341876 3.555793 6.0375300 2.093111 0.4371526 0.846178 -1.5238210 0.06295000 0.099650 0.043375 -0.056275 0.542910049 0.001617414   FALSE
ENST00000495434 ENSG00000162910 No_inf pgKDN_inf MRPL55 protein_coding protein_coding 56.93103 69.15787 47.7537 14.25613 2.177716 -0.5341876 8.534040 25.6021186 0.000000 14.7853073 0.000000 -11.3226109 0.09106667 0.273200 0.000000 -0.273200 0.792517071 0.001617414   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000162910 E001 0.000000       1 228106679 228106679 1 -      
ENSG00000162910 E002 0.117004 0.0117056643 0.4192616954   1 228106680 228106684 5 - 0.106 0.000 -9.547
ENSG00000162910 E003 0.117004 0.0117056643 0.4192616954   1 228106685 228106686 2 - 0.106 0.000 -9.548
ENSG00000162910 E004 32.132371 0.0108029742 0.2185153992 0.505153532 1 228106687 228106918 232 - 1.559 1.480 -0.271
ENSG00000162910 E005 0.000000       1 228107667 228107667 1 -      
ENSG00000162910 E006 30.564666 0.0018736363 0.3890895453 0.674973571 1 228107668 228107766 99 - 1.520 1.473 -0.161
ENSG00000162910 E007 17.443284 0.0019189956 0.6474059124 0.851016097 1 228107767 228107784 18 - 1.279 1.247 -0.114
ENSG00000162910 E008 22.354651 0.0006266275 0.6274545867 0.839945450 1 228107785 228107823 39 - 1.380 1.350 -0.104
ENSG00000162910 E009 21.177868 0.0006459241 0.0821333329 0.295003941 1 228107824 228107869 46 - 1.400 1.292 -0.375
ENSG00000162910 E010 4.232855 0.0037462189 0.0370851744 0.185484211 1 228107870 228107976 107 - 0.543 0.806 1.115
ENSG00000162910 E011 3.871489 0.0038068945 0.0138446304 0.099281518 1 228107977 228108058 82 - 0.468 0.792 1.419
ENSG00000162910 E012 2.265044 0.0061670006 0.0025971511 0.030955745 1 228108059 228108084 26 - 0.192 0.649 2.641
ENSG00000162910 E013 2.745644 0.0052949957 0.0398810131 0.193534511 1 228108085 228108113 29 - 0.378 0.670 1.407
ENSG00000162910 E014 3.108358 0.0047086683 0.1046078908 0.338082573 1 228108114 228108137 24 - 0.468 0.689 1.004
ENSG00000162910 E015 4.085170 0.0040078589 0.2211001024 0.508175850 1 228108138 228108225 88 - 0.607 0.760 0.641
ENSG00000162910 E016 1.609852 0.0875411105 0.3884513694 0.674287689 1 228108226 228108231 6 - 0.324 0.469 0.812
ENSG00000162910 E017 1.249337 0.0199226979 0.1198095333 0.365809573 1 228108232 228108234 3 - 0.192 0.436 1.641
ENSG00000162910 E018 14.211572 0.0010058996 0.2487973092 0.539681229 1 228108235 228108244 10 - 1.225 1.138 -0.309
ENSG00000162910 E019 12.402243 0.0011714799 0.7332032826 0.893897602 1 228108245 228108246 2 - 1.138 1.110 -0.101
ENSG00000162910 E020 14.221865 0.0010447079 0.4380572536 0.714235011 1 228108247 228108261 15 - 1.211 1.152 -0.209
ENSG00000162910 E021 14.603077 0.0009591654 0.4775646786 0.743836649 1 228108262 228108289 28 - 1.218 1.165 -0.189
ENSG00000162910 E022 14.978948 0.0010619243 0.5196840138 0.774357321 1 228108290 228108318 29 - 1.225 1.178 -0.169
ENSG00000162910 E023 3.846720 0.0053093411 0.1909603127 0.470307023 1 228108319 228108321 3 - 0.577 0.743 0.712
ENSG00000162910 E024 6.396312 0.0037901571 0.0000839555 0.002056338 1 228108322 228108436 115 - 0.543 1.003 1.864
ENSG00000162910 E025 4.117931 0.0050230262 0.0207087648 0.129616632 1 228108437 228108440 4 - 0.508 0.806 1.285
ENSG00000162910 E026 5.566153 0.0847990953 0.4884511753 0.751744256 1 228108441 228108474 34 - 0.757 0.848 0.359
ENSG00000162910 E027 4.440924 0.0720838435 0.8463613425 0.945457895 1 228108475 228108508 34 - 0.713 0.743 0.126
ENSG00000162910 E028 19.913825 0.0043249535 0.0524076251 0.227489163 1 228108509 228108897 389 - 1.232 1.367 0.470
ENSG00000162910 E029 5.014071 0.0029110577 0.3478415710 0.638389866 1 228108898 228108954 57 - 0.834 0.726 -0.429
ENSG00000162910 E030 12.832824 0.0013870949 0.0780980497 0.285898338 1 228108955 228109021 67 - 1.211 1.072 -0.496
ENSG00000162910 E031 1.234863 0.0923254494 0.8449510240 0.944763011 1 228109022 228109148 127 - 0.324 0.361 0.226
ENSG00000162910 E032 8.923546 0.0381476390 0.3043368998 0.597768241 1 228109149 228109260 112 - 1.062 0.933 -0.477
ENSG00000162910 E033 6.014055 0.1032115809 0.9318468364 0.980131975 1 228109261 228109312 52 - 0.851 0.835 -0.062

Help

Please Click HERE to learn more details about the results from DEXseq.