ENSG00000163219

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000409202 ENSG00000163219 No_inf pgKDN_inf ARHGAP25 protein_coding protein_coding 34.06481 44.48635 34.60564 1.131075 1.458948 -0.362263 10.086206 10.023988 14.6780993 0.270580 1.3008114 0.5497525 0.29705833 0.225375 0.42305 0.197675 0.02085688 0.01487745 FALSE TRUE
ENST00000497259 ENSG00000163219 No_inf pgKDN_inf ARHGAP25 protein_coding protein_coding 34.06481 44.48635 34.60564 1.131075 1.458948 -0.362263 3.369218 10.107653 0.0000000 6.248257 0.0000000 -9.9826590 0.07294167 0.218825 0.00000 -0.218825 0.80549435 0.01487745 FALSE TRUE
MSTRG.16434.17 ENSG00000163219 No_inf pgKDN_inf ARHGAP25 protein_coding   34.06481 44.48635 34.60564 1.131075 1.458948 -0.362263 5.849942 9.490835 0.0000000 3.820617 0.0000000 -9.8919105 0.18540833 0.217750 0.00000 -0.217750 0.01487745 0.01487745 FALSE TRUE
MSTRG.16434.18 ENSG00000163219 No_inf pgKDN_inf ARHGAP25 protein_coding   34.06481 44.48635 34.60564 1.131075 1.458948 -0.362263 7.908579 5.714608 15.2065911 3.782297 0.9788217 1.4103964 0.23440000 0.133050 0.44055 0.307500 0.20279678 0.01487745 FALSE TRUE
MSTRG.16434.8 ENSG00000163219 No_inf pgKDN_inf ARHGAP25 protein_coding   34.06481 44.48635 34.60564 1.131075 1.458948 -0.362263 2.579105 1.980331 0.7782022 1.254219 0.4500706 -1.3363708 0.09553333 0.046050 0.02415 -0.021900 1.00000000 0.01487745 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000163219 E001 0.0000000       2 68679601 68679729 129 +      
ENSG00000163219 E002 0.0000000       2 68679846 68679961 116 +      
ENSG00000163219 E003 0.0000000       2 68679962 68680095 134 +      
ENSG00000163219 E004 0.0000000       2 68710505 68710698 194 +      
ENSG00000163219 E005 0.6069134 0.1694691868 0.4607813173 0.73197902 2 68734811 68734864 54 + 0.270 0.152 -1.042
ENSG00000163219 E006 0.7334205 0.3743182258 0.6672324012 0.86152588 2 68734865 68734881 17 + 0.270 0.211 -0.457
ENSG00000163219 E007 1.7205572 0.1530299905 0.8741877062 0.95699839 2 68734882 68734951 70 + 0.434 0.427 -0.041
ENSG00000163219 E008 7.3767988 0.0254033519 0.8462467070 0.94538858 2 68734952 68735075 124 + 0.927 0.909 -0.068
ENSG00000163219 E009 4.6445910 0.0066471123 0.1935818697 0.47336981 2 68735076 68735108 33 + 0.828 0.678 -0.608
ENSG00000163219 E010 18.8999002 0.0073729999 0.0008465649 0.01318851 2 68735109 68735260 152 + 1.419 1.176 -0.850
ENSG00000163219 E011 0.0000000       2 68735312 68735376 65 +      
ENSG00000163219 E012 0.9886093 0.0126735815 0.8030414877 0.92682315 2 68735377 68735539 163 + 0.270 0.311 0.281
ENSG00000163219 E013 1.5076973 0.0679575621 0.0863131598 0.30441905 2 68757638 68757730 93 + 0.197 0.490 1.866
ENSG00000163219 E014 0.0000000       2 68774801 68774845 45 +      
ENSG00000163219 E015 0.1265070 0.0122762271 0.7491570447   2 68774846 68774903 58 + 0.000 0.082 11.298
ENSG00000163219 E016 0.6342667 0.0142544819 0.0484714527 0.21674541 2 68774904 68774939 36 + 0.000 0.311 13.483
ENSG00000163219 E017 5.2353756 0.0027525891 0.0358725263 0.18166656 2 68774940 68775220 281 + 0.618 0.874 1.039
ENSG00000163219 E018 22.7967944 0.0006380998 0.0361371234 0.18250956 2 68775221 68775356 136 + 1.437 1.315 -0.425
ENSG00000163219 E019 13.6828017 0.0010777660 0.0130912548 0.09582841 2 68775357 68775420 64 + 1.260 1.074 -0.663
ENSG00000163219 E020 0.2543986 0.0160219128 0.3773003509   2 68775605 68775740 136 + 0.000 0.152 12.239
ENSG00000163219 E021 0.1268540 0.0123411477 0.7491133179   2 68775741 68775772 32 + 0.000 0.082 11.298
ENSG00000163219 E022 15.5935309 0.0008962110 0.2974038164 0.59051568 2 68782233 68782320 88 + 1.253 1.182 -0.251
ENSG00000163219 E023 20.3390662 0.0051709319 0.7690664463 0.91066821 2 68787840 68787956 117 + 1.306 1.332 0.092
ENSG00000163219 E024 0.1187032 0.0118743990 0.3840695967   2 68806915 68806939 25 + 0.109 0.000 -12.770
ENSG00000163219 E025 0.6346750 0.0150423856 0.0486077469 0.21718252 2 68807231 68807272 42 + 0.000 0.311 13.478
ENSG00000163219 E026 8.5017631 0.0700741037 0.9366312660 0.98192879 2 68807273 68807275 3 + 0.969 0.971 0.006
ENSG00000163219 E027 43.3340217 0.0003519623 0.7726814200 0.91247837 2 68807276 68807480 205 + 1.643 1.636 -0.027
ENSG00000163219 E028 12.3591578 0.0081453455 0.3618835451 0.65125850 2 68813287 68813288 2 + 1.065 1.151 0.312
ENSG00000163219 E029 32.7868262 0.0004563235 0.7641130563 0.90819295 2 68813289 68813419 131 + 1.509 1.529 0.070
ENSG00000163219 E030 1.4760757 0.0142988868 0.9901545664 1.00000000 2 68816154 68816288 135 + 0.386 0.391 0.029
ENSG00000163219 E031 22.6758547 0.0006193374 0.8750706386 0.95732813 2 68816289 68816362 74 + 1.358 1.372 0.051
ENSG00000163219 E032 0.6270271 0.0148285008 0.3123538120 0.60581001 2 68816363 68816552 190 + 0.109 0.264 1.544
ENSG00000163219 E033 0.3706447 0.1804707649 0.8394992898   2 68816702 68816935 234 + 0.109 0.152 0.544
ENSG00000163219 E034 27.8306462 0.0099938231 0.8972482341 0.96613081 2 68817873 68817994 122 + 1.455 1.450 -0.019
ENSG00000163219 E035 0.2372762 0.2044220467 0.1868888963   2 68817995 68817995 1 + 0.197 0.000 -12.954
ENSG00000163219 E036 45.9602150 0.0004129886 0.8980308750 0.96634897 2 68819123 68819319 197 + 1.657 1.668 0.036
ENSG00000163219 E037 0.3806233 0.0158732133 0.1836664024   2 68819320 68819742 423 + 0.000 0.211 12.792
ENSG00000163219 E038 97.0212877 0.0001814345 0.5065156753 0.76520522 2 68822340 68822872 533 + 1.969 1.993 0.082
ENSG00000163219 E039 178.5837160 0.0028923153 0.1466002966 0.40767396 2 68825987 68826925 939 + 2.221 2.262 0.140

Help

Please Click HERE to learn more details about the results from DEXseq.