ENSG00000163399

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000295598 ENSG00000163399 No_inf pgKDN_inf ATP1A1 protein_coding protein_coding 330.0071 182.7448 378.4632 6.100495 6.854145 1.050281 217.047645 95.24814 270.650281 6.595832 3.854573 1.5065689 0.63532500 0.52255 0.71570 0.19315 0.0002809705 0.0002809705 FALSE TRUE
ENST00000369496 ENSG00000163399 No_inf pgKDN_inf ATP1A1 protein_coding protein_coding 330.0071 182.7448 378.4632 6.100495 6.854145 1.050281 5.324301 11.63182 4.341081 6.722525 4.341081 -1.4198711 0.02526667 0.06410 0.01170 -0.05240 0.8254128970 0.0002809705 FALSE TRUE
ENST00000440951 ENSG00000163399 No_inf pgKDN_inf ATP1A1 protein_coding protein_coding 330.0071 182.7448 378.4632 6.100495 6.854145 1.050281 104.616203 70.46756 102.321551 5.691292 7.511060 0.5380152 0.32660000 0.38395 0.26955 -0.11440 0.0261246371 0.0002809705 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000163399 E001 0.0000000       1 116372668 116372921 254 +      
ENSG00000163399 E002 16.4344976 8.190064e-04 0.070780535 0.26943058 1 116373244 116373268 25 + 1.250 1.105 -0.518
ENSG00000163399 E003 95.6338560 1.697044e-03 0.039754531 0.19322177 1 116373269 116373523 255 + 1.975 1.897 -0.260
ENSG00000163399 E004 0.7544457 2.817637e-01 0.036816312 0.18474609 1 116373867 116374241 375 + 0.064 0.461 3.577
ENSG00000163399 E005 0.4801267 1.527836e-02 0.920233581   1 116382411 116382593 183 + 0.169 0.139 -0.330
ENSG00000163399 E006 0.4798448 1.573512e-02 0.919805811   1 116383370 116383553 184 + 0.169 0.139 -0.330
ENSG00000163399 E007 99.8853019 3.157207e-03 0.419070058 0.69875916 1 116384014 116384124 111 + 1.960 1.992 0.106
ENSG00000163399 E008 73.6530024 2.278211e-04 0.624720638 0.83858031 1 116384783 116384842 60 + 1.846 1.827 -0.062
ENSG00000163399 E009 2.0883378 7.140165e-03 0.047278898 0.21363439 1 116384843 116386144 1302 + 0.356 0.644 1.425
ENSG00000163399 E010 40.7706838 3.858049e-04 0.890724144 0.96365730 1 116387288 116387302 15 + 1.586 1.593 0.025
ENSG00000163399 E011 174.0997564 1.170105e-04 0.154703766 0.42021519 1 116387303 116387491 189 + 2.220 2.186 -0.115
ENSG00000163399 E012 126.4024735 3.567694e-04 0.225229800 0.51292252 1 116388131 116388244 114 + 2.083 2.047 -0.119
ENSG00000163399 E013 0.6350523 3.114744e-01 0.010769772 0.08434106 1 116388245 116388525 281 + 0.000 0.461 11.714
ENSG00000163399 E014 127.9855257 4.473357e-04 0.235440047 0.52478504 1 116388638 116388726 89 + 2.088 2.053 -0.116
ENSG00000163399 E015 94.9681901 1.691312e-04 0.055091454 0.23384072 1 116388727 116388772 46 + 1.968 1.903 -0.217
ENSG00000163399 E016 147.2144748 2.259293e-04 0.203086311 0.48568895 1 116388902 116389019 118 + 2.148 2.114 -0.114
ENSG00000163399 E017 288.1832031 7.660669e-05 0.505287118 0.76413026 1 116389439 116389707 269 + 2.431 2.419 -0.040
ENSG00000163399 E018 1.8602235 1.164670e-02 0.003650360 0.03986869 1 116389708 116389940 233 + 0.253 0.680 2.255
ENSG00000163399 E019 151.9487365 2.239045e-04 0.607329215 0.82906917 1 116390213 116390411 199 + 2.155 2.142 -0.044
ENSG00000163399 E020 0.0000000       1 116390782 116390891 110 +      
ENSG00000163399 E021 0.0000000       1 116392854 116392988 135 +      
ENSG00000163399 E022 159.1324382 1.276939e-04 0.065657508 0.25812522 1 116393531 116393723 193 + 2.156 2.203 0.156
ENSG00000163399 E023 178.1109200 1.064362e-04 0.192048967 0.47186775 1 116395110 116395285 176 + 2.210 2.241 0.104
ENSG00000163399 E024 25.2078164 5.709234e-04 0.911482866 0.97179299 1 116396598 116396734 137 + 1.388 1.381 -0.023
ENSG00000163399 E025 0.0000000       1 116397888 116398038 151 +      
ENSG00000163399 E026 0.0000000       1 116398621 116398789 169 +      
ENSG00000163399 E027 0.0000000       1 116398930 116399084 155 +      
ENSG00000163399 E028 77.7117837 2.223992e-04 0.141684381 0.40050343 1 116399420 116399470 51 + 1.846 1.899 0.181
ENSG00000163399 E029 78.8215831 2.334802e-04 0.097544708 0.32545477 1 116399471 116399543 73 + 1.849 1.909 0.202
ENSG00000163399 E030 0.0000000       1 116400861 116401006 146 +      
ENSG00000163399 E031 94.6557420 1.752945e-04 0.003870352 0.04151124 1 116401130 116401260 131 + 1.916 2.010 0.316
ENSG00000163399 E032 21.9483862 6.473456e-04 0.032114267 0.16950977 1 116401554 116401655 102 + 1.280 1.421 0.489
ENSG00000163399 E033 0.0000000       1 116401656 116402033 378 +      
ENSG00000163399 E034 0.0000000       1 116403884 116403975 92 +      
ENSG00000163399 E035 0.0000000       1 116404416 116404774 359 +      
ENSG00000163399 E036 0.2459655 1.622505e-02 0.497000167   1 116406109 116406398 290 + 0.064 0.139 1.255
ENSG00000163399 E037 0.4892854 1.576666e-02 0.392474552   1 116410135 116410261 127 + 0.120 0.245 1.255

Help

Please Click HERE to learn more details about the results from DEXseq.