ENSG00000164050

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000296440 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding protein_coding 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 0.5807538 0.0000000 1.5360061 0.0000000 0.1825277 7.2724022 0.06025000 0.000000 0.158250 0.158250 0.0004666853 0.0004666853 FALSE TRUE
ENST00000358536 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding protein_coding 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 0.6569642 1.4188313 0.0000000 0.2457895 0.0000000 -7.1586918 0.07450000 0.104575 0.000000 -0.104575 0.0116357972 0.0004666853 FALSE TRUE
ENST00000465117 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding protein_coding_CDS_not_defined 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 0.9764123 2.9292370 0.0000000 1.0118414 0.0000000 -8.1992979 0.06999167 0.209975 0.000000 -0.209975 0.0586964693 0.0004666853 FALSE FALSE
ENST00000467913 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding retained_intron 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 0.4808751 1.2033785 0.2392469 0.9254717 0.2392469 -2.2833821 0.03152500 0.080450 0.014125 -0.066325 0.8390281449 0.0004666853 FALSE FALSE
ENST00000483676 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding retained_intron 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 1.5033269 0.0000000 3.2596618 0.0000000 1.8824020 8.3529976 0.13057500 0.000000 0.255300 0.255300 0.3888857991 0.0004666853 FALSE FALSE
ENST00000483753 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding retained_intron 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 1.0824898 2.9094254 0.3380441 1.9965507 0.3380441 -3.0683423 0.05848333 0.146725 0.028725 -0.118000 0.8131855775 0.0004666853 FALSE FALSE
ENST00000485535 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding retained_intron 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 2.5930203 3.9408572 2.3140964 0.3485934 0.3090800 -0.7654958 0.27741667 0.279075 0.263275 -0.015800 0.9140494283 0.0004666853 FALSE TRUE
ENST00000497627 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding retained_intron 11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 0.9036703 0.0000000 2.7110109 0.0000000 1.9891150 8.0879989 0.05594167 0.000000 0.167825 0.167825 0.3362372491 0.0004666853 FALSE FALSE
MSTRG.20113.4 ENSG00000164050 No_inf pgKDN_inf PLXNB1 protein_coding   11.05047 15.30107 11.83302 2.382911 2.599 -0.3705378 0.6143808 0.5391555 0.2080008 0.3115548 0.2080008 -1.3328814 0.08285000 0.029075 0.014950 -0.014125 0.8511228531 0.0004666853 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164050 E001 0.0000000       3 48403854 48403855 2 -      
ENSG00000164050 E002 1.4778937 0.0100023963 0.901355766 0.96818868 3 48403856 48403968 113 - 0.398 0.380 -0.100
ENSG00000164050 E003 18.5228507 0.0009536866 0.873173259 0.95670513 3 48403969 48404485 517 - 1.272 1.283 0.040
ENSG00000164050 E004 3.6846304 0.0059172013 0.461097822 0.73206117 3 48404486 48404508 23 - 0.716 0.623 -0.393
ENSG00000164050 E005 5.3465858 0.0042662053 0.188831773 0.46736969 3 48404509 48404590 82 - 0.690 0.845 0.621
ENSG00000164050 E006 5.6155496 0.0027047982 0.028518870 0.15810588 3 48405724 48405798 75 - 0.633 0.892 1.043
ENSG00000164050 E007 0.7501684 0.3871594305 0.423268821 0.70254757 3 48405799 48406065 267 - 0.114 0.301 1.736
ENSG00000164050 E008 0.4917399 0.0156966320 0.685690379   3 48406723 48406822 100 - 0.204 0.146 -0.585
ENSG00000164050 E009 4.6841777 0.0031592255 0.789455611 0.91918525 3 48406823 48406898 76 - 0.763 0.732 -0.126
ENSG00000164050 E010 0.0000000       3 48407022 48407026 5 -      
ENSG00000164050 E011 4.5477334 0.0030822831 0.462282304 0.73275320 3 48407027 48407091 65 - 0.785 0.699 -0.351
ENSG00000164050 E012 4.1566637 0.0036507059 0.127624060 0.37873911 3 48409329 48409373 45 - 0.806 0.623 -0.755
ENSG00000164050 E013 3.5021257 0.0040805345 0.001710530 0.02262834 3 48409374 48409398 25 - 0.845 0.447 -1.737
ENSG00000164050 E014 3.1501726 0.0057329258 0.009580196 0.07818101 3 48409399 48409430 32 - 0.785 0.447 -1.503
ENSG00000164050 E015 3.2772787 0.0058025726 0.017245607 0.11490112 3 48409431 48409476 46 - 0.785 0.477 -1.351
ENSG00000164050 E016 0.0000000       3 48409477 48409570 94 -      
ENSG00000164050 E017 8.5134451 0.0054501205 0.933220103 0.98068730 3 48409571 48409731 161 - 0.973 0.963 -0.035
ENSG00000164050 E018 6.5505421 0.0025621027 0.738455490 0.89627694 3 48409905 48410014 110 - 0.845 0.880 0.137
ENSG00000164050 E019 4.8522947 0.0030401587 0.126165761 0.37663118 3 48410015 48410077 63 - 0.633 0.819 0.763
ENSG00000164050 E020 6.0755096 0.0024404414 0.291744922 0.58513892 3 48410296 48410380 85 - 0.763 0.880 0.459
ENSG00000164050 E021 4.4620126 0.0031703463 0.412857038 0.69382830 3 48410455 48410493 39 - 0.663 0.763 0.415
ENSG00000164050 E022 5.2138185 0.0144949492 0.248365557 0.53924351 3 48410494 48410558 65 - 0.690 0.832 0.572
ENSG00000164050 E023 0.2542726 0.1633921789 0.457464651   3 48410559 48410760 202 - 0.000 0.146 11.582
ENSG00000164050 E024 0.2536433 0.0160360275 0.415044814   3 48410761 48410867 107 - 0.000 0.146 11.713
ENSG00000164050 E025 4.3610303 0.0043919649 0.079859724 0.29001778 3 48410868 48410946 79 - 0.568 0.792 0.945
ENSG00000164050 E026 3.4630491 0.0116188835 0.658832499 0.85748865 3 48410947 48411005 59 - 0.602 0.662 0.263
ENSG00000164050 E027 2.9678757 0.0674979572 0.907921068 0.97069859 3 48411006 48411036 31 - 0.568 0.602 0.152
ENSG00000164050 E028 5.3079983 0.0569166384 0.978432802 0.99704463 3 48411863 48412009 147 - 0.785 0.792 0.028
ENSG00000164050 E029 0.8713260 0.1760552058 0.570392253 0.80698725 3 48412010 48412237 228 - 0.204 0.301 0.736
ENSG00000164050 E030 2.7401036 0.0050921511 0.216275170 0.50237241 3 48412238 48412304 67 - 0.447 0.623 0.830
ENSG00000164050 E031 7.0436578 0.0021074233 0.833712112 0.94012616 3 48412442 48412620 179 - 0.881 0.903 0.084
ENSG00000164050 E032 9.2927259 0.0079790969 0.356538293 0.64634924 3 48412742 48412959 218 - 0.944 1.033 0.329
ENSG00000164050 E033 5.3207144 0.0030000413 0.713196394 0.88430581 3 48413069 48413169 101 - 0.763 0.806 0.169
ENSG00000164050 E034 1.6067925 0.2399037247 0.976689873 0.99623254 3 48413170 48413219 50 - 0.398 0.415 0.093
ENSG00000164050 E035 3.2294839 0.0046107770 0.334618417 0.62644693 3 48413220 48413669 450 - 0.531 0.662 0.585
ENSG00000164050 E036 4.1859657 0.0466810833 0.681689408 0.86827810 3 48413670 48413758 89 - 0.740 0.681 -0.245
ENSG00000164050 E037 2.8129189 0.0942483665 0.344118386 0.63543142 3 48413759 48413818 60 - 0.663 0.505 -0.711
ENSG00000164050 E038 0.0000000       3 48413819 48413894 76 -      
ENSG00000164050 E039 1.2342874 0.0109149041 0.998375898 1.00000000 3 48413895 48413907 13 - 0.342 0.342 0.000
ENSG00000164050 E040 3.9491480 0.0037430813 0.937474758 0.98208705 3 48413908 48413986 79 - 0.690 0.681 -0.038
ENSG00000164050 E041 4.4463048 0.0034818844 0.899266086 0.96710647 3 48413987 48414071 85 - 0.716 0.732 0.067
ENSG00000164050 E042 5.7341704 0.0024530412 0.048398075 0.21655178 3 48414799 48414990 192 - 0.663 0.892 0.917
ENSG00000164050 E043 3.1143662 0.0141479121 0.224364419 0.51185951 3 48414991 48415041 51 - 0.491 0.662 0.777
ENSG00000164050 E044 1.7349340 0.1459406198 0.858586948 0.95070265 3 48415176 48415211 36 - 0.398 0.447 0.262
ENSG00000164050 E045 4.9792478 0.0031890062 0.099756439 0.32997631 3 48415212 48415347 136 - 0.633 0.832 0.813
ENSG00000164050 E046 0.3726934 0.0166780186 0.868664628   3 48415348 48415535 188 - 0.114 0.146 0.415
ENSG00000164050 E047 5.7990842 0.0194094806 0.975017371 0.99541136 3 48415583 48415759 177 - 0.826 0.819 -0.026
ENSG00000164050 E048 3.1865258 0.0625826961 0.409782320 0.69191874 3 48416031 48416167 137 - 0.690 0.556 -0.586
ENSG00000164050 E049 2.6557858 0.0059793764 0.008091705 0.06960415 3 48416346 48416451 106 - 0.740 0.380 -1.685
ENSG00000164050 E050 0.2442663 0.0164007138 0.750478327   3 48416452 48416469 18 - 0.114 0.079 -0.585
ENSG00000164050 E051 1.3773865 0.0108661649 0.123031718 0.37122197 3 48416470 48416833 364 - 0.204 0.447 1.585
ENSG00000164050 E052 3.7876531 0.0089833310 0.100398898 0.33088385 3 48417911 48418062 152 - 0.785 0.580 -0.865
ENSG00000164050 E053 0.1268540 0.0126518252 0.811290637   3 48418189 48418190 2 - 0.000 0.079 10.827
ENSG00000164050 E054 2.7298105 0.0057349459 0.434980890 0.71193091 3 48418191 48418286 96 - 0.491 0.602 0.514
ENSG00000164050 E055 1.9692591 0.0069872431 0.758586921 0.90517392 3 48418287 48418363 77 - 0.491 0.447 -0.223
ENSG00000164050 E056 1.6085258 0.0094618393 0.916791074 0.97384901 3 48418449 48418542 94 - 0.398 0.415 0.093
ENSG00000164050 E057 2.0770096 0.0068249790 0.285241935 0.57890632 3 48418917 48419039 123 - 0.568 0.415 -0.755
ENSG00000164050 E058 1.7029680 0.0175567350 0.206475050 0.49012175 3 48419244 48419366 123 - 0.531 0.342 -1.000
ENSG00000164050 E059 0.2533610 0.0164555034 0.414132650   3 48419367 48419576 210 - 0.000 0.146 11.712
ENSG00000164050 E060 1.0785138 0.0164095781 0.022349572 0.13594246 3 48419577 48419674 98 - 0.491 0.146 -2.393
ENSG00000164050 E061 3.4543956 0.0047219154 0.941831095 0.98360528 3 48419675 48420078 404 - 0.633 0.643 0.043
ENSG00000164050 E062 2.3599211 0.0307740912 0.496047461 0.75706228 3 48420079 48420223 145 - 0.447 0.556 0.530
ENSG00000164050 E063 0.8607531 0.0139082720 0.875401234 0.95747176 3 48420224 48420257 34 - 0.279 0.255 -0.170
ENSG00000164050 E064 1.9693215 0.0072483940 0.759869178 0.90587706 3 48420665 48420773 109 - 0.491 0.447 -0.223
ENSG00000164050 E065 1.7108604 0.0346555945 0.467466070 0.73581067 3 48420848 48420956 109 - 0.491 0.380 -0.585
ENSG00000164050 E066 2.3086552 0.0090399350 0.121494065 0.36897691 3 48421228 48421384 157 - 0.633 0.415 -1.045
ENSG00000164050 E067 1.7209953 0.0215070013 0.820679294 0.93501450 3 48421674 48421806 133 - 0.447 0.415 -0.170
ENSG00000164050 E068 1.8390714 0.0104170514 0.603056375 0.82686115 3 48422105 48422205 101 - 0.491 0.415 -0.393
ENSG00000164050 E069 1.4809157 0.1720104994 0.999814791 1.00000000 3 48422331 48422412 82 - 0.398 0.380 -0.100
ENSG00000164050 E070 0.7457912 0.0224684634 0.740815553 0.89714860 3 48422413 48422443 31 - 0.204 0.255 0.415
ENSG00000164050 E071 0.6185288 0.0181801886 1.000000000 1.00000000 3 48422444 48422459 16 - 0.204 0.204 0.000
ENSG00000164050 E072 2.0785822 0.0068777237 0.285752148 0.57936998 3 48422765 48422947 183 - 0.568 0.415 -0.755
ENSG00000164050 E073 5.1421289 0.0030512163 0.189864170 0.46876081 3 48423505 48424403 899 - 0.863 0.716 -0.585
ENSG00000164050 E074 2.4420549 0.0059090024 0.178670741 0.45356433 3 48424404 48424617 214 - 0.633 0.447 -0.875
ENSG00000164050 E075 0.9962612 0.3621049579 0.547791757 0.79318623 3 48425281 48425333 53 - 0.204 0.342 1.002
ENSG00000164050 E076 0.8793806 0.0125398236 0.143408387 0.40329887 3 48429253 48429481 229 - 0.114 0.342 2.000
ENSG00000164050 E077 0.1170040 0.0118149929 0.354264767   3 48430008 48430086 79 - 0.114 0.000 -12.470

Help

Please Click HERE to learn more details about the results from DEXseq.