ENSG00000164062

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000296456 ENSG00000164062 No_inf pgKDN_inf APEH protein_coding protein_coding 62.5352 48.33401 74.70022 4.270203 4.167573 0.6279686 17.7302754 14.648148 22.549557 1.982211 0.897210 0.6220358 0.28724167 0.309825 0.303600 -0.006225 1.00000000 0.01943075 FALSE TRUE
ENST00000442186 ENSG00000164062 No_inf pgKDN_inf APEH protein_coding protein_coding 62.5352 48.33401 74.70022 4.270203 4.167573 0.6279686 8.2992039 2.041432 14.797120 2.041432 2.224857 2.8515879 0.12127500 0.036775 0.196325 0.159550 0.01943075 0.01943075 FALSE TRUE
ENST00000447541 ENSG00000164062 No_inf pgKDN_inf APEH protein_coding nonsense_mediated_decay 62.5352 48.33401 74.70022 4.270203 4.167573 0.6279686 3.9164219 2.890703 5.092561 2.890703 2.161693 0.8148190 0.05621667 0.052075 0.066725 0.014650 0.46896751 0.01943075 FALSE FALSE
ENST00000469362 ENSG00000164062 No_inf pgKDN_inf APEH protein_coding nonsense_mediated_decay 62.5352 48.33401 74.70022 4.270203 4.167573 0.6279686 20.1134058 14.849598 23.656730 2.538235 2.834177 0.6714653 0.31810833 0.300125 0.315175 0.015050 0.96888903 0.01943075 FALSE TRUE
MSTRG.20165.3 ENSG00000164062 No_inf pgKDN_inf APEH protein_coding   62.5352 48.33401 74.70022 4.270203 4.167573 0.6279686 0.8682573 2.604772 0.000000 2.604772 0.000000 -8.0305413 0.02250000 0.067500 0.000000 -0.067500 0.83578623 0.01943075 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164062 E001 0.1265070 0.0123102786 0.436260359   3 49674014 49674033 20 + 0.000 0.104 11.401
ENSG00000164062 E002 0.0000000       3 49674034 49674079 46 +      
ENSG00000164062 E003 0.2543986 0.0160584606 0.179127899   3 49674080 49674110 31 + 0.000 0.188 12.411
ENSG00000164062 E004 0.3543453 0.0158373804 0.149639485   3 49674351 49674359 9 + 0.221 0.000 -12.505
ENSG00000164062 E005 0.7249926 0.0139884356 0.570578113 0.80700600 3 49674360 49674361 2 + 0.275 0.188 -0.701
ENSG00000164062 E006 1.0973391 0.0237554564 0.980872747 0.99799086 3 49674362 49674366 5 + 0.323 0.319 -0.023
ENSG00000164062 E007 2.0672242 0.0066817837 0.765811529 0.90900302 3 49674367 49674378 12 + 0.506 0.462 -0.216
ENSG00000164062 E008 2.5665507 0.0055539793 0.798532311 0.92420690 3 49674379 49674382 4 + 0.535 0.570 0.161
ENSG00000164062 E009 2.5665507 0.0055539793 0.798532311 0.92420690 3 49674383 49674384 2 + 0.535 0.570 0.161
ENSG00000164062 E010 8.3498526 0.0016194838 0.054135894 0.23159196 3 49674385 49674413 29 + 1.047 0.860 -0.702
ENSG00000164062 E011 0.8590513 0.0155428855 0.518041420 0.77332244 3 49674414 49674485 72 + 0.221 0.319 0.714
ENSG00000164062 E012 0.2442663 0.0164814221 0.871391012   3 49674486 49674488 3 + 0.087 0.104 0.299
ENSG00000164062 E013 18.3721119 0.0129502185 0.293636725 0.58717978 3 49674489 49674621 133 + 1.324 1.238 -0.303
ENSG00000164062 E014 0.3628408 0.0166743128 0.720230337   3 49675123 49675133 11 + 0.159 0.104 -0.702
ENSG00000164062 E015 0.7259635 0.0138940637 0.571069182 0.80731127 3 49675134 49675182 49 + 0.275 0.188 -0.702
ENSG00000164062 E016 22.1589151 0.0031837818 0.351039439 0.64135671 3 49675183 49675309 127 + 1.391 1.330 -0.214
ENSG00000164062 E017 0.2545247 0.2745063414 0.235047333   3 49675310 49675693 384 + 0.000 0.188 12.412
ENSG00000164062 E018 28.9174070 0.0005339853 0.915401297 0.97352098 3 49675694 49675787 94 + 1.473 1.478 0.018
ENSG00000164062 E019 27.9011920 0.0300394117 0.574679315 0.80957686 3 49675891 49675966 76 + 1.479 1.437 -0.146
ENSG00000164062 E020 0.3719991 0.0166889160 0.462501898   3 49675967 49676055 89 + 0.087 0.188 1.298
ENSG00000164062 E021 39.7545339 0.0004920655 0.063583483 0.25374114 3 49676056 49676219 164 + 1.648 1.560 -0.301
ENSG00000164062 E022 3.3455403 0.0052895620 0.024377796 0.14317782 3 49676220 49676377 158 + 0.475 0.770 1.298
ENSG00000164062 E023 17.4867926 0.0009054659 0.208144538 0.49185364 3 49676378 49676386 9 + 1.305 1.217 -0.312
ENSG00000164062 E024 35.2915803 0.0113864949 0.539906489 0.78814473 3 49676387 49676515 129 + 1.578 1.536 -0.142
ENSG00000164062 E025 0.2533610 0.0160446613 0.179068018   3 49676516 49676516 1 + 0.000 0.188 12.411
ENSG00000164062 E026 25.2593396 0.0181206119 0.307712556 0.60089681 3 49676609 49676669 61 + 1.456 1.372 -0.292
ENSG00000164062 E027 23.7304634 0.0074533521 0.601684116 0.82575208 3 49676670 49676700 31 + 1.410 1.372 -0.133
ENSG00000164062 E028 26.9333772 0.0005546340 0.785612477 0.91746364 3 49676777 49676817 41 + 1.453 1.437 -0.056
ENSG00000164062 E029 41.5378563 0.0014574392 0.612217683 0.83126651 3 49676903 49677024 122 + 1.639 1.615 -0.084
ENSG00000164062 E030 0.1265070 0.0123102786 0.436260359   3 49677025 49677025 1 + 0.000 0.104 11.411
ENSG00000164062 E031 27.6373351 0.0154759999 0.628976340 0.84093232 3 49677573 49677633 61 + 1.473 1.437 -0.124
ENSG00000164062 E032 25.7349098 0.0133614531 0.878762566 0.95898952 3 49678852 49678910 59 + 1.432 1.419 -0.045
ENSG00000164062 E033 20.4583432 0.0203140918 0.322432977 0.61538272 3 49678911 49678949 39 + 1.291 1.372 0.281
ENSG00000164062 E034 18.8725190 0.0035862800 0.167915802 0.43880533 3 49679593 49679616 24 + 1.250 1.346 0.336
ENSG00000164062 E035 19.9471293 0.0006964689 0.274259612 0.56778622 3 49679617 49679644 28 + 1.286 1.356 0.245
ENSG00000164062 E036 6.4467058 0.0279294162 0.004729246 0.04761816 3 49679645 49680280 636 + 0.677 1.021 1.340
ENSG00000164062 E037 15.9984846 0.0009050063 0.686993022 0.87091674 3 49680541 49680549 9 + 1.216 1.244 0.100
ENSG00000164062 E038 27.2616076 0.0005243787 0.412051165 0.69353288 3 49680550 49680629 80 + 1.429 1.474 0.156
ENSG00000164062 E039 12.3805546 0.0313336211 0.343436474 0.63462853 3 49681101 49681104 4 + 1.081 1.172 0.327
ENSG00000164062 E040 14.4223861 0.0084743099 0.714738025 0.88505948 3 49681105 49681125 21 + 1.173 1.202 0.103
ENSG00000164062 E041 37.0148261 0.0004265731 0.542125152 0.78952755 3 49681126 49681239 114 + 1.565 1.594 0.098
ENSG00000164062 E042 33.5587517 0.0014198256 0.092469310 0.31578799 3 49681722 49681805 84 + 1.495 1.582 0.298
ENSG00000164062 E043 28.4950412 0.0101820465 0.341925031 0.63335456 3 49681887 49681967 81 + 1.439 1.501 0.212
ENSG00000164062 E044 38.5726190 0.0003805742 0.781720858 0.91603295 3 49682348 49682436 89 + 1.591 1.603 0.042
ENSG00000164062 E045 32.5993725 0.0004440266 0.169481894 0.44139439 3 49682546 49682600 55 + 1.557 1.486 -0.246
ENSG00000164062 E046 46.2993602 0.0085694323 0.081282282 0.29300084 3 49682601 49682736 136 + 1.718 1.617 -0.340
ENSG00000164062 E047 0.1265070 0.0123102786 0.436260359   3 49682828 49682842 15 + 0.000 0.104 11.411
ENSG00000164062 E048 39.3978663 0.0030585676 0.946794988 0.98583871 3 49682843 49682945 103 + 1.608 1.603 -0.015
ENSG00000164062 E049 34.6107332 0.0058568624 0.284212044 0.57796141 3 49683040 49683146 107 + 1.521 1.582 0.207
ENSG00000164062 E050 0.7261197 0.3178046547 0.663463809 0.85992639 3 49683147 49683236 90 + 0.275 0.188 -0.701
ENSG00000164062 E051 42.1213211 0.0031597740 0.094418928 0.31977334 3 49683237 49683971 735 + 1.593 1.676 0.282

Help

Please Click HERE to learn more details about the results from DEXseq.