ENSG00000164073

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000296468 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding protein_coding 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.3122287 0.0000000 0.5245343 0.0000000 0.5245343 5.7402107 0.02900833 0.000000 0.050050 0.050050 9.447066e-01 5.668672e-09 FALSE TRUE
ENST00000503928 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding protein_coding_CDS_not_defined 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.5745561 0.0000000 1.7236684 0.0000000 0.7559243 7.4376841 0.03797500 0.000000 0.113925 0.113925 1.174607e-01 5.668672e-09   FALSE
ENST00000641434 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding nonsense_mediated_decay 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.9434354 0.0000000 1.2758392 0.0000000 0.7463764 7.0065665 0.08806667 0.000000 0.111775 0.111775 6.508078e-01 5.668672e-09 TRUE TRUE
ENST00000641482 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding protein_coding 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.7588765 0.8168674 1.4597622 0.4835051 0.8493257 0.8298549 0.07901667 0.126275 0.110775 -0.015500 9.947370e-01 5.668672e-09 FALSE TRUE
ENST00000641509 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding protein_coding 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.3154713 0.4235620 0.0000000 0.4235620 0.0000000 -5.4381663 0.03883333 0.061425 0.000000 -0.061425 8.117435e-01 5.668672e-09 FALSE TRUE
ENST00000641590 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding protein_coding 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 1.0735422 1.0032903 1.0988832 0.6241625 0.6564926 0.1300600 0.09960833 0.130150 0.079900 -0.050250 9.394475e-01 5.668672e-09 FALSE TRUE
ENST00000641658 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding nonsense_mediated_decay 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.5245814 0.0000000 1.5737441 0.0000000 1.5737441 7.3071954 0.03898333 0.000000 0.116950 0.116950 9.338132e-01 5.668672e-09 FALSE TRUE
ENST00000641686 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding protein_coding 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 1.5811111 3.0963197 0.0000000 0.2616787 0.0000000 -8.2790625 0.19381667 0.450850 0.000000 -0.450850 5.668672e-09 5.668672e-09 FALSE TRUE
ENST00000641742 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding nonsense_mediated_decay 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.6050154 0.0000000 0.6833671 0.0000000 0.4578121 6.1155474 0.05404167 0.000000 0.057575 0.057575 6.933252e-01 5.668672e-09 FALSE TRUE
ENST00000641830 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding protein_coding 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.3300611 0.0000000 0.9901834 0.0000000 0.9901834 6.6441208 0.01887500 0.000000 0.056625 0.056625 9.041578e-01 5.668672e-09 FALSE FALSE
ENST00000641869 ENSG00000164073 No_inf pgKDN_inf MFSD8 protein_coding nonsense_mediated_decay 11.41073 7.003237 13.57057 0.4479483 1.455432 0.9533912 0.6715764 0.0000000 1.0927743 0.0000000 1.0927743 6.7849937 0.04136667 0.000000 0.085000 0.085000 9.318352e-01 5.668672e-09 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164073 E001 0.0000000       4 127917799 127917803 5 -      
ENSG00000164073 E002 0.0000000       4 127917804 127917804 1 -      
ENSG00000164073 E003 0.0000000       4 127917805 127917813 9 -      
ENSG00000164073 E004 0.1271363 0.012320915 0.469833769   4 127917814 127917819 6 - 0.000 0.102 10.071
ENSG00000164073 E005 0.1271363 0.012320915 0.469833769   4 127917820 127917824 5 - 0.000 0.102 12.826
ENSG00000164073 E006 0.1271363 0.012320915 0.469833769   4 127917825 127917826 2 - 0.000 0.102 12.826
ENSG00000164073 E007 0.1271363 0.012320915 0.469833769   4 127917827 127917834 8 - 0.000 0.102 12.826
ENSG00000164073 E008 0.1271363 0.012320915 0.469833769   4 127917835 127917845 11 - 0.000 0.102 12.826
ENSG00000164073 E009 0.1271363 0.012320915 0.469833769   4 127917846 127917848 3 - 0.000 0.102 12.826
ENSG00000164073 E010 0.1271363 0.012320915 0.469833769   4 127917849 127917851 3 - 0.000 0.102 12.826
ENSG00000164073 E011 0.1271363 0.012320915 0.469833769   4 127917852 127917859 8 - 0.000 0.102 12.826
ENSG00000164073 E012 0.1271363 0.012320915 0.469833769   4 127917860 127917861 2 - 0.000 0.102 12.826
ENSG00000164073 E013 0.6069187 0.165565262 0.779842101 0.91516360 4 127917862 127917888 27 - 0.225 0.184 -0.364
ENSG00000164073 E014 0.7239227 0.288821979 0.605952089 0.82841109 4 127917889 127917897 9 - 0.280 0.184 -0.778
ENSG00000164073 E015 1.3303016 0.010752971 0.497342010 0.75796558 4 127917898 127917924 27 - 0.413 0.313 -0.587
ENSG00000164073 E016 1.3303016 0.010752971 0.497342010 0.75796558 4 127917925 127917932 8 - 0.413 0.313 -0.587
ENSG00000164073 E017 2.5566632 0.005541714 0.732336162 0.89360727 4 127917933 127917959 27 - 0.571 0.529 -0.194
ENSG00000164073 E018 14.6490182 0.001025770 0.990725854 1.00000000 4 127917960 127918294 335 - 1.191 1.199 0.028
ENSG00000164073 E019 6.8714040 0.003306057 0.300400693 0.59324736 4 127918295 127918387 93 - 0.839 0.951 0.427
ENSG00000164073 E020 3.5909067 0.008521746 0.045179808 0.20779393 4 127918388 127918389 2 - 0.514 0.780 1.147
ENSG00000164073 E021 26.3019953 0.000539491 0.009386776 0.07711598 4 127918390 127919193 804 - 1.357 1.508 0.518
ENSG00000164073 E022 2.3242034 0.006221638 0.947816300 0.98636832 4 127919194 127919214 21 - 0.514 0.529 0.069
ENSG00000164073 E023 2.4428415 0.006088326 0.886299031 0.96195870 4 127919215 127919238 24 - 0.543 0.529 -0.069
ENSG00000164073 E024 3.3264399 0.069588456 0.440490229 0.71623153 4 127919239 127919290 52 - 0.571 0.696 0.542
ENSG00000164073 E025 1.9896499 0.301929901 0.300354820 0.59321517 4 127919291 127919312 22 - 0.330 0.592 1.356
ENSG00000164073 E026 2.2523904 0.042155016 0.013100878 0.09586632 4 127919313 127919338 26 - 0.280 0.672 2.028
ENSG00000164073 E027 10.0214138 0.016247840 0.004844636 0.04842664 4 127919339 127919780 442 - 0.879 1.168 1.063
ENSG00000164073 E028 6.6684457 0.011000001 0.043446889 0.20335155 4 127919781 127920056 276 - 0.761 0.988 0.873
ENSG00000164073 E029 2.7777401 0.140403929 0.467642107 0.73597343 4 127920057 127920188 132 - 0.643 0.493 -0.685
ENSG00000164073 E030 1.4589537 0.009016638 0.733657482 0.89417614 4 127920189 127920218 30 - 0.413 0.366 -0.265
ENSG00000164073 E031 1.3418847 0.009319674 0.939636019 0.98284291 4 127920219 127920219 1 - 0.373 0.366 -0.042
ENSG00000164073 E032 1.8396683 0.007688270 0.606021658 0.82843747 4 127920220 127920253 34 - 0.413 0.493 0.413
ENSG00000164073 E033 1.2168857 0.010701370 0.676319232 0.86583911 4 127920254 127920264 11 - 0.373 0.313 -0.364
ENSG00000164073 E034 2.0877071 0.007495584 0.607640245 0.82915330 4 127920265 127920301 37 - 0.449 0.529 0.390
ENSG00000164073 E035 2.3339550 0.006830196 0.605673613 0.82819260 4 127920302 127920321 20 - 0.483 0.561 0.373
ENSG00000164073 E036 2.5624808 0.006396236 0.730726469 0.89302550 4 127920322 127920339 18 - 0.571 0.529 -0.195
ENSG00000164073 E037 7.6963060 0.076781993 0.767665364 0.91009155 4 127920340 127920452 113 - 0.952 0.924 -0.102
ENSG00000164073 E038 3.9069220 0.059609369 0.755358724 0.90358940 4 127920453 127920456 4 - 0.706 0.672 -0.142
ENSG00000164073 E039 10.6455509 0.001424449 0.755992559 0.90383999 4 127920457 127920556 100 - 1.049 1.083 0.121
ENSG00000164073 E040 8.8724663 0.032679787 0.114933834 0.35738492 4 127920557 127920617 61 - 0.892 1.083 0.706
ENSG00000164073 E041 4.2250450 0.188148411 0.076642549 0.28306781 4 127920618 127920627 10 - 0.514 0.866 1.485
ENSG00000164073 E042 5.5453132 0.047740742 0.145648350 0.40626737 4 127920628 127920655 28 - 0.706 0.910 0.806
ENSG00000164073 E043 13.1579979 0.015290444 0.582778190 0.81415697 4 127920656 127920836 181 - 1.171 1.128 -0.155
ENSG00000164073 E044 5.1493633 0.002869880 0.456073004 0.72850115 4 127920837 127921117 281 - 0.743 0.833 0.358
ENSG00000164073 E045 2.4051039 0.005695874 0.048253178 0.21622159 4 127921118 127921198 81 - 0.644 0.366 -1.364
ENSG00000164073 E046 2.3328287 0.006437892 0.604441651 0.82743834 4 127921199 127921356 158 - 0.483 0.561 0.373
ENSG00000164073 E047 1.9581189 0.007005172 0.788612555 0.91890468 4 127921357 127921466 110 - 0.449 0.493 0.221
ENSG00000164073 E048 1.3410981 0.009665516 0.938032056 0.98217474 4 127921467 127921523 57 - 0.373 0.366 -0.042
ENSG00000164073 E049 12.0910268 0.001208090 0.005250417 0.05142110 4 127921524 127921771 248 - 1.209 0.988 -0.801
ENSG00000164073 E050 0.1272623 0.012405193 0.469665992   4 127921772 127921859 88 - 0.000 0.102 12.826
ENSG00000164073 E051 2.8942125 0.025853030 0.104016616 0.33699959 4 127921860 127921925 66 - 0.686 0.455 -1.059
ENSG00000164073 E052 3.7815776 0.060394853 0.710509532 0.88296362 4 127921926 127921963 38 - 0.706 0.647 -0.250
ENSG00000164073 E053 0.0000000       4 127921964 127921982 19 -      
ENSG00000164073 E054 0.0000000       4 127921983 127921989 7 -      
ENSG00000164073 E055 0.0000000       4 127930673 127930682 10 -      
ENSG00000164073 E056 3.2792621 0.005693013 0.321225658 0.61427583 4 127930683 127930687 5 - 0.686 0.561 -0.545
ENSG00000164073 E057 8.4840332 0.001695386 0.064410892 0.25569977 4 127930688 127930817 130 - 1.049 0.881 -0.627
ENSG00000164073 E058 0.0000000       4 127932319 127932339 21 -      
ENSG00000164073 E059 0.0000000       4 127932340 127932369 30 -      
ENSG00000164073 E060 0.0000000       4 127932370 127932421 52 -      
ENSG00000164073 E061 0.0000000       4 127932422 127932663 242 -      
ENSG00000164073 E062 0.0000000       4 127932664 127932914 251 -      
ENSG00000164073 E063 0.1170040 0.011719598 0.615061087   4 127932915 127932984 70 - 0.089 0.000 -13.366
ENSG00000164073 E064 5.1886981 0.003951153 0.030113281 0.16324552 4 127932985 127933017 33 - 0.892 0.647 -0.986
ENSG00000164073 E065 4.4623881 0.005579340 0.039090214 0.19142108 4 127933018 127933064 47 - 0.839 0.592 -1.020
ENSG00000164073 E066 3.0150849 0.080280461 0.245270018 0.53571430 4 127933065 127933093 29 - 0.686 0.493 -0.866
ENSG00000164073 E067 0.3627758 0.016690818 0.670776703   4 127933094 127933713 620 - 0.162 0.102 -0.779
ENSG00000164073 E068 0.1170040 0.011719598 0.615061087   4 127934558 127934662 105 - 0.089 0.000 -13.366
ENSG00000164073 E069 2.6330443 0.183113983 0.125017913 0.37491433 4 127938783 127938836 54 - 0.686 0.366 -1.542
ENSG00000164073 E070 1.1865190 0.010855339 0.013072991 0.09575970 4 127938837 127938838 2 - 0.483 0.102 -2.949
ENSG00000164073 E071 0.0000000       4 127938839 127939079 241 -      
ENSG00000164073 E072 0.4818259 0.015434760 0.388109124   4 127939080 127939480 401 - 0.225 0.102 -1.364
ENSG00000164073 E073 0.4818259 0.015434760 0.388109124   4 127939481 127939601 121 - 0.225 0.102 -1.364
ENSG00000164073 E074 0.0000000       4 127939779 127939852 74 -      
ENSG00000164073 E075 2.3986279 0.122438495 0.125768228 0.37596628 4 127939853 127939888 36 - 0.643 0.366 -1.363
ENSG00000164073 E076 5.5541513 0.005493316 0.058530811 0.24236474 4 127939889 127939997 109 - 0.905 0.696 -0.827
ENSG00000164073 E077 1.8064923 0.007713663 0.116037817 0.35919370 4 127942045 127942070 26 - 0.543 0.313 -1.239
ENSG00000164073 E078 2.4156455 0.005829403 0.132613051 0.38654617 4 127942071 127942149 79 - 0.621 0.413 -1.002
ENSG00000164073 E079 1.2093353 0.053586041 0.315816173 0.60863394 4 127942150 127942158 9 - 0.413 0.253 -1.002
ENSG00000164073 E080 0.3809057 0.015951906 0.079361606   4 127943391 127943751 361 - 0.000 0.253 14.203
ENSG00000164073 E081 1.4629136 0.009591740 0.732687917 0.89374172 4 127943752 127943755 4 - 0.413 0.366 -0.265
ENSG00000164073 E082 9.5134956 0.034191556 0.580979911 0.81329193 4 127943756 127943992 237 - 1.050 0.988 -0.228
ENSG00000164073 E083 0.0000000       4 127945335 127945630 296 -      
ENSG00000164073 E084 5.2466703 0.003062826 0.750840199 0.90169929 4 127949804 127949847 44 - 0.809 0.780 -0.117
ENSG00000164073 E085 5.8720252 0.002344233 0.857253551 0.94999102 4 127957501 127957590 90 - 0.824 0.850 0.100
ENSG00000164073 E086 1.9506557 0.007173990 0.819791634 0.93450438 4 127957591 127957592 2 - 0.483 0.455 -0.142
ENSG00000164073 E087 0.2340080 0.222264677 0.344048506   4 127964659 127965071 413 - 0.162 0.000 -13.994
ENSG00000164073 E088 2.4679216 0.085841007 0.347670024 0.63831161 4 127965072 127965208 137 - 0.449 0.620 0.805
ENSG00000164073 E089 0.0000000       4 127965209 127965222 14 -      
ENSG00000164073 E090 0.0000000       4 127965223 127965242 20 -      
ENSG00000164073 E091 0.0000000       4 127965243 127965482 240 -      
ENSG00000164073 E092 0.0000000       4 127965897 127966034 138 -      

Help

Please Click HERE to learn more details about the results from DEXseq.