ENSG00000164190

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000282516 ENSG00000164190 No_inf pgKDN_inf NIPBL protein_coding protein_coding 21.99085 23.08867 22.62523 3.59459 1.972765 -0.02923993 0.6716001 1.840631 0.000000 0.4730043 0.0000000 -7.5318734 0.02751667 0.076400 0.000000 -0.076400 0.0005654272 0.0005654272 FALSE  
ENST00000448238 ENSG00000164190 No_inf pgKDN_inf NIPBL protein_coding protein_coding 21.99085 23.08867 22.62523 3.59459 1.972765 -0.02923993 2.8706655 1.644653 3.031563 0.7762511 0.3200760 0.8782843 0.14345833 0.067125 0.133775 0.066650 0.5657571328 0.0005654272 FALSE  
ENST00000513819 ENSG00000164190 No_inf pgKDN_inf NIPBL protein_coding protein_coding 21.99085 23.08867 22.62523 3.59459 1.972765 -0.02923993 10.6936014 10.708371 11.608156 3.5665414 1.9626635 0.1162954 0.44442500 0.422875 0.501675 0.078800 0.8387435052 0.0005654272 FALSE  
MSTRG.22804.10 ENSG00000164190 No_inf pgKDN_inf NIPBL protein_coding   21.99085 23.08867 22.62523 3.59459 1.972765 -0.02923993 1.7084244 3.473204 0.829014 0.2011028 0.8290140 -2.0536480 0.07929167 0.160075 0.044750 -0.115325 0.1127466604 0.0005654272 FALSE  
MSTRG.22804.4 ENSG00000164190 No_inf pgKDN_inf NIPBL protein_coding   21.99085 23.08867 22.62523 3.59459 1.972765 -0.02923993 2.4760179 1.986958 3.818056 0.7180000 0.5202421 0.9388083 0.12264167 0.104250 0.175100 0.070850 0.7683647916 0.0005654272 FALSE  
MSTRG.22804.8 ENSG00000164190 No_inf pgKDN_inf NIPBL protein_coding   21.99085 23.08867 22.62523 3.59459 1.972765 -0.02923993 2.7376337 2.032159 2.829301 0.4101789 1.0068215 0.4754411 0.14030833 0.096400 0.122400 0.026000 0.9917699113 0.0005654272 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164190 E001 0.2545247 0.2592513228 3.344525e-01   5 36876769 36876789 21 + 0.000 0.167 9.777
ENSG00000164190 E002 0.2537694 0.0160751930 2.732377e-01   5 36876790 36876840 51 + 0.000 0.167 12.899
ENSG00000164190 E003 3.8268421 0.0066338557 3.170060e-01 6.097236e-01 5 36876841 36877178 338 + 0.609 0.737 0.540
ENSG00000164190 E004 3.6850044 0.0051243197 9.007952e-01 9.679270e-01 5 36953618 36953760 143 + 0.661 0.677 0.069
ENSG00000164190 E005 0.0000000       5 36954968 36955010 43 +      
ENSG00000164190 E006 3.9664647 0.0035872058 1.277941e-01 3.789974e-01 5 36955472 36955637 166 + 0.581 0.773 0.810
ENSG00000164190 E007 3.9646357 0.0161430090 1.449232e-01 4.052865e-01 5 36958104 36958231 128 + 0.581 0.773 0.809
ENSG00000164190 E008 1.4415452 0.0120702734 5.874445e-02 2.429695e-01 5 36961484 36961505 22 + 0.518 0.231 -1.708
ENSG00000164190 E009 2.2029478 0.0224190781 8.535994e-01 9.483216e-01 5 36961506 36961583 78 + 0.518 0.493 -0.123
ENSG00000164190 E010 3.0658591 0.1062314035 9.366658e-01 9.819451e-01 5 36962123 36962274 152 + 0.609 0.607 -0.007
ENSG00000164190 E011 2.6850252 0.0056641065 5.334702e-01 7.839832e-01 5 36970876 36971036 161 + 0.609 0.524 -0.386
ENSG00000164190 E012 2.9176901 0.0187799952 3.331837e-01 6.252435e-01 5 36971945 36972041 97 + 0.660 0.524 -0.609
ENSG00000164190 E013 18.6664634 0.0008213930 8.089885e-02 2.922829e-01 5 36975776 36976402 627 + 1.351 1.235 -0.407
ENSG00000164190 E014 3.4168892 0.0069243312 5.548717e-01 7.976345e-01 5 36984676 36984738 63 + 0.684 0.607 -0.330
ENSG00000164190 E015 7.0209490 0.0020588340 3.892357e-01 6.750594e-01 5 36984739 36984926 188 + 0.853 0.941 0.336
ENSG00000164190 E016 55.4866622 0.0037953037 6.037135e-01 8.271413e-01 5 36984927 36986301 1375 + 1.737 1.762 0.082
ENSG00000164190 E017 0.0000000       5 36995150 36995621 472 +      
ENSG00000164190 E018 5.8745413 0.0232658236 5.922410e-01 8.199267e-01 5 36995622 36995626 5 + 0.868 0.806 -0.244
ENSG00000164190 E019 12.1684347 0.0021434326 2.755110e-02 1.548017e-01 5 36995627 36995749 123 + 1.206 1.026 -0.648
ENSG00000164190 E020 4.4886228 0.1486194123 2.062601e-01 4.898789e-01 5 36995750 36995804 55 + 0.837 0.632 -0.838
ENSG00000164190 E021 0.3634051 0.0167226547 5.312635e-01   5 36996472 36997002 531 + 0.179 0.092 -1.123
ENSG00000164190 E022 10.0482643 0.0088881162 7.076811e-01 8.813779e-01 5 37000373 37000570 198 + 1.060 1.026 -0.123
ENSG00000164190 E023 5.2653274 0.0026084821 6.655478e-01 8.608896e-01 5 37000817 37000888 72 + 0.821 0.773 -0.190
ENSG00000164190 E024 6.1067233 0.0198800376 2.985359e-01 5.915874e-01 5 37000989 37001078 90 + 0.911 0.790 -0.472
ENSG00000164190 E025 6.1154478 0.0883038785 5.904151e-01 8.186857e-01 5 37002662 37002765 104 + 0.898 0.806 -0.355
ENSG00000164190 E026 4.6401271 0.0353938414 4.457610e-01 7.201340e-01 5 37003261 37003347 87 + 0.804 0.698 -0.429
ENSG00000164190 E027 10.2419584 0.0047812898 1.013030e-01 3.323404e-01 5 37006357 37006588 232 + 1.123 0.975 -0.538
ENSG00000164190 E028 7.2479926 0.0151663725 9.444387e-01 9.845722e-01 5 37007323 37007474 152 + 0.911 0.918 0.023
ENSG00000164190 E029 4.7674116 0.0047478051 4.621343e-01 7.326499e-01 5 37008008 37008088 81 + 0.804 0.718 -0.346
ENSG00000164190 E030 3.6573300 0.0045533770 3.385868e-01 6.302707e-01 5 37008623 37008723 101 + 0.728 0.607 -0.510
ENSG00000164190 E031 7.2296704 0.0032555083 8.429085e-01 9.437711e-01 5 37010087 37010225 139 + 0.925 0.905 -0.074
ENSG00000164190 E032 7.1583991 0.0036248759 2.185702e-01 5.051580e-01 5 37014683 37014765 83 + 0.837 0.964 0.482
ENSG00000164190 E033 7.2172709 0.0448592586 5.918997e-01 8.197498e-01 5 37016038 37016170 133 + 0.950 0.879 -0.271
ENSG00000164190 E034 7.1061448 0.0440388602 7.929113e-01 9.209905e-01 5 37017019 37017162 144 + 0.925 0.892 -0.124
ENSG00000164190 E035 10.5879936 0.0040382367 8.202504e-02 2.947131e-01 5 37019311 37019400 90 + 1.139 0.986 -0.558
ENSG00000164190 E036 14.2163780 0.0013103437 9.896492e-03 7.972475e-02 5 37020459 37020673 215 + 1.276 1.080 -0.698
ENSG00000164190 E037 6.6662775 0.0020995946 1.964452e-02 1.255582e-01 5 37020775 37020877 103 + 0.997 0.755 -0.931
ENSG00000164190 E038 8.1717137 0.0037681721 2.376196e-01 5.265732e-01 5 37022051 37022149 99 + 1.019 0.905 -0.426
ENSG00000164190 E039 10.6763582 0.0012924785 8.942752e-01 9.650039e-01 5 37022244 37022390 147 + 1.060 1.071 0.043
ENSG00000164190 E040 12.3916573 0.0015941974 9.489383e-01 9.867620e-01 5 37024585 37024719 135 + 1.123 1.128 0.020
ENSG00000164190 E041 11.7075449 0.0012078163 1.009329e-01 3.316912e-01 5 37026229 37026327 99 + 1.170 1.035 -0.486
ENSG00000164190 E042 7.9761049 0.0021344635 9.817098e-01 9.982866e-01 5 37027359 37027412 54 + 0.950 0.953 0.010
ENSG00000164190 E043 8.1363535 0.0017511093 2.618613e-01 5.546345e-01 5 37036379 37036487 109 + 0.897 1.006 0.407
ENSG00000164190 E044 12.0054080 0.0014010624 6.715141e-01 8.637149e-01 5 37038602 37038738 137 + 1.131 1.097 -0.123
ENSG00000164190 E045 12.6602326 0.0014791353 4.617464e-02 2.107560e-01 5 37044347 37044487 141 + 1.213 1.054 -0.571
ENSG00000164190 E046 9.3935278 0.0049053096 1.743782e-01 4.480809e-01 5 37044636 37044729 94 + 1.079 0.953 -0.462
ENSG00000164190 E047 18.5648113 0.0008398578 4.910592e-01 7.535004e-01 5 37045443 37045597 155 + 1.264 1.311 0.164
ENSG00000164190 E048 12.1748251 0.0025408351 5.076930e-01 7.660887e-01 5 37046109 37046199 91 + 1.088 1.143 0.199
ENSG00000164190 E049 0.2447669 0.0166030695 9.461612e-01   5 37048324 37048354 31 + 0.099 0.092 -0.123
ENSG00000164190 E050 18.6297524 0.0007579085 7.117434e-01 8.834798e-01 5 37048502 37048675 174 + 1.304 1.280 -0.085
ENSG00000164190 E051 21.7507451 0.0007135809 3.920343e-01 6.770839e-01 5 37049111 37049301 191 + 1.326 1.380 0.188
ENSG00000164190 E052 1.2533017 0.2389705924 1.858384e-01 4.637919e-01 5 37050943 37051778 836 + 0.179 0.459 1.878
ENSG00000164190 E053 12.1029519 0.0011319020 3.530460e-01 6.428737e-01 5 37051779 37051886 108 + 1.155 1.080 -0.269
ENSG00000164190 E054 19.1150212 0.0043063930 7.114624e-01 8.833983e-01 5 37052366 37052566 201 + 1.315 1.291 -0.086
ENSG00000164190 E055 17.5133973 0.0025450860 6.701142e-01 8.629935e-01 5 37057186 37057332 147 + 1.282 1.253 -0.103
ENSG00000164190 E056 9.0439922 0.0022319378 4.088200e-01 6.910490e-01 5 37058891 37058902 12 + 1.040 0.964 -0.279
ENSG00000164190 E057 39.3221094 0.0010084163 3.657037e-01 6.541912e-01 5 37058903 37059165 263 + 1.580 1.624 0.148
ENSG00000164190 E058 29.7622303 0.0004920460 2.542851e-01 5.459856e-01 5 37060844 37061018 175 + 1.452 1.514 0.212
ENSG00000164190 E059 28.0483958 0.0164071081 4.031843e-01 6.862110e-01 5 37063790 37063978 189 + 1.424 1.492 0.233
ENSG00000164190 E060 6.0569842 0.0025559833 1.205388e-01 3.673167e-01 5 37063979 37064019 41 + 0.748 0.918 0.661
ENSG00000164190 E061 16.6375869 0.0058283131 1.704000e-01 4.426099e-01 5 37064020 37064526 507 + 1.185 1.291 0.373
ENSG00000164190 E062 80.8659784 0.0004438326 2.150534e-06 9.040287e-05 5 37064527 37066413 1887 + 1.820 1.977 0.526

Help

Please Click HERE to learn more details about the results from DEXseq.