ENSG00000164211

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000296632 ENSG00000164211 No_inf pgKDN_inf STARD4 protein_coding protein_coding 34.44894 25.12062 39.85665 0.6003555 1.253694 0.6657362 17.247441 14.1062314 18.493947 3.2488721 2.113204 0.3904781 0.50787500 0.562625 0.465675 -0.096950 0.8345018 0.0455419 FALSE  
MSTRG.23331.1 ENSG00000164211 No_inf pgKDN_inf STARD4 protein_coding   34.44894 25.12062 39.85665 0.6003555 1.253694 0.6657362 4.273115 5.0882905 2.426998 1.6985291 1.607157 -1.0649086 0.13482500 0.203275 0.062525 -0.140750 0.6030465 0.0455419    
MSTRG.23331.3 ENSG00000164211 No_inf pgKDN_inf STARD4 protein_coding   34.44894 25.12062 39.85665 0.6003555 1.253694 0.6657362 3.230337 0.3875874 4.109645 0.3875874 1.283815 3.3731759 0.08326667 0.015400 0.101375 0.085975 0.1164776 0.0455419 FALSE  
MSTRG.23331.4 ENSG00000164211 No_inf pgKDN_inf STARD4 protein_coding   34.44894 25.12062 39.85665 0.6003555 1.253694 0.6657362 1.290542 0.0000000 3.526423 0.0000000 1.213747 8.4661472 0.03250833 0.000000 0.088325 0.088325 0.0455419 0.0455419 TRUE  
MSTRG.23331.9 ENSG00000164211 No_inf pgKDN_inf STARD4 protein_coding   34.44894 25.12062 39.85665 0.6003555 1.253694 0.6657362 4.866617 3.7653409 6.814422 3.7653409 1.812987 0.8540999 0.14377500 0.149100 0.171600 0.022500 0.2206920 0.0455419 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164211 E001 0.2543986 1.596426e-02 0.15546756   5 111496033 111496033 1 - 0.000 0.196 11.402
ENSG00000164211 E002 0.3816610 2.751681e-02 0.05830442   5 111496034 111496034 1 - 0.000 0.269 13.713
ENSG00000164211 E003 2.7910211 3.886062e-02 0.49706204 0.7578874 5 111496035 111496131 97 - 0.618 0.517 -0.462
ENSG00000164211 E004 171.3450102 4.235497e-03 0.20633371 0.4899574 5 111496132 111496946 815 - 2.215 2.256 0.138
ENSG00000164211 E005 419.7326431 7.045903e-05 0.54488212 0.7910820 5 111496947 111499401 2455 - 2.623 2.619 -0.011
ENSG00000164211 E006 24.6877867 5.689154e-04 0.53823053 0.7870970 5 111499402 111499584 183 - 1.421 1.388 -0.116
ENSG00000164211 E007 39.5029854 3.774179e-04 0.71446077 0.8849189 5 111499585 111499881 297 - 1.595 1.616 0.069
ENSG00000164211 E008 43.9556122 3.952783e-03 0.13137724 0.3845281 5 111499882 111500106 225 - 1.681 1.607 -0.254
ENSG00000164211 E009 2.2362129 1.584935e-02 0.01359386 0.0981225 5 111500107 111500146 40 - 0.311 0.673 1.824
ENSG00000164211 E010 3.8211944 3.917386e-03 0.08658678 0.3049208 5 111500147 111500245 99 - 0.571 0.788 0.915
ENSG00000164211 E011 2.4547033 8.263759e-02 0.60087529 0.8253141 5 111500246 111500266 21 - 0.491 0.586 0.445
ENSG00000164211 E012 10.2432330 2.884927e-03 0.95340904 0.9885480 5 111500267 111500463 197 - 1.044 1.052 0.030
ENSG00000164211 E013 3.3076790 2.621255e-02 0.58123795 0.8133955 5 111500464 111500470 7 - 0.595 0.673 0.338
ENSG00000164211 E014 6.7004795 2.321054e-03 0.91630513 0.9737077 5 111500471 111500608 138 - 0.887 0.879 -0.031
ENSG00000164211 E015 2.4310647 5.903706e-03 0.82099667 0.9350145 5 111500609 111500630 22 - 0.546 0.517 -0.140
ENSG00000164211 E016 19.8354931 7.262134e-04 0.07956482 0.2893627 5 111500631 111500987 357 - 1.260 1.377 0.410
ENSG00000164211 E017 3.3999194 4.130238e-03 0.73126587 0.8932539 5 111500988 111501001 14 - 0.660 0.617 -0.183
ENSG00000164211 E018 23.4228827 3.878342e-03 0.27033096 0.5639858 5 111501002 111501085 84 - 1.414 1.345 -0.240
ENSG00000164211 E019 13.8660132 2.459611e-03 0.78383413 0.9168028 5 111501086 111501116 31 - 1.178 1.159 -0.066
ENSG00000164211 E020 23.2868312 1.270512e-02 0.30958070 0.6029077 5 111501962 111502088 127 - 1.414 1.339 -0.259
ENSG00000164211 E021 0.3629044 1.643334e-02 0.78747252   5 111505015 111505043 29 - 0.152 0.109 -0.555
ENSG00000164211 E022 0.4799084 1.986055e-02 0.48679318   5 111506216 111506329 114 - 0.212 0.109 -1.140
ENSG00000164211 E023 17.8445708 8.288453e-04 0.27681963 0.5702484 5 111506330 111506375 46 - 1.303 1.230 -0.255
ENSG00000164211 E024 10.1072655 9.916463e-03 0.94907580 0.9867620 5 111506376 111506379 4 - 1.044 1.041 -0.010
ENSG00000164211 E025 11.7048087 1.594944e-03 0.81087364 0.9303800 5 111507329 111507442 114 - 1.091 1.114 0.083
ENSG00000164211 E026 0.1265070 1.227049e-02 0.39567328   5 111507443 111507540 98 - 0.000 0.109 12.300
ENSG00000164211 E027 0.0000000       5 111512385 111512390 6 -      
ENSG00000164211 E028 0.1176306 1.174123e-02 0.72667011   5 111512391 111512599 209 - 0.083 0.000 -12.505

Help

Please Click HERE to learn more details about the results from DEXseq.