ENSG00000164506

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000321680 ENSG00000164506 No_inf pgKDN_inf STXBP5 protein_coding protein_coding 15.22616 16.86076 21.23379 8.240505 15.38517 0.3325162 1.6279480 2.4081398 1.7139929 0.8090730 0.1331181 -0.4881438 0.18915833 0.206175 0.223575 0.017400 0.9522420481 0.0009852641 FALSE TRUE
ENST00000367480 ENSG00000164506 No_inf pgKDN_inf STXBP5 protein_coding protein_coding 15.22616 16.86076 21.23379 8.240505 15.38517 0.3325162 1.3008362 0.0000000 2.3603727 0.0000000 0.3608772 7.8889701 0.18370000 0.000000 0.300050 0.300050 0.0017112725 0.0009852641 FALSE TRUE
ENST00000367481 ENSG00000164506 No_inf pgKDN_inf STXBP5 protein_coding protein_coding 15.22616 16.86076 21.23379 8.240505 15.38517 0.3325162 0.4958491 0.7120174 0.0000000 0.7120174 0.0000000 -6.1739617 0.05396667 0.078750 0.000000 -0.078750 0.8949016679 0.0009852641 FALSE TRUE
ENST00000392291 ENSG00000164506 No_inf pgKDN_inf STXBP5 protein_coding protein_coding 15.22616 16.86076 21.23379 8.240505 15.38517 0.3325162 0.7555464 0.0000000 0.2516212 0.0000000 0.2516212 4.7094073 0.08317500 0.000000 0.037375 0.037375 0.8423181359 0.0009852641 FALSE FALSE
MSTRG.25505.1 ENSG00000164506 No_inf pgKDN_inf STXBP5 protein_coding   15.22616 16.86076 21.23379 8.240505 15.38517 0.3325162 1.6259380 1.7187193 1.5071591 0.2704300 0.1739348 -0.1883313 0.19430833 0.145275 0.210475 0.065200 0.9459386912 0.0009852641 TRUE TRUE
MSTRG.25505.6 ENSG00000164506 No_inf pgKDN_inf STXBP5 protein_coding   15.22616 16.86076 21.23379 8.240505 15.38517 0.3325162 7.5362776 8.4716262 14.1372067 8.4716262 14.1372067 0.7381044 0.13786667 0.203775 0.209825 0.006050 0.9997738321 0.0009852641   FALSE
MSTRG.25505.7 ENSG00000164506 No_inf pgKDN_inf STXBP5 protein_coding   15.22616 16.86076 21.23379 8.240505 15.38517 0.3325162 1.4626198 3.5502590 0.0000000 0.5454317 0.0000000 -8.4758384 0.15160000 0.366050 0.000000 -0.366050 0.0009852641 0.0009852641 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164506 E001 3.9456652 0.0041434530 9.982394e-01 1.000000000 6 147204036 147204416 381 + 0.686 0.685 -0.006
ENSG00000164506 E002 0.0000000       6 147204417 147204424 8 +      
ENSG00000164506 E003 0.0000000       6 147204425 147204532 108 +      
ENSG00000164506 E004 2.0788035 0.0065753361 3.123317e-01 0.605793360 6 147204533 147204682 150 + 0.565 0.418 -0.724
ENSG00000164506 E005 3.6755301 0.0039192767 3.053784e-01 0.598636304 6 147205971 147206068 98 + 0.736 0.605 -0.554
ENSG00000164506 E006 1.2181493 0.0110233697 2.233568e-01 0.510976379 6 147235250 147235258 9 + 0.444 0.257 -1.139
ENSG00000164506 E007 3.4146717 0.0043409621 8.193163e-02 0.294495193 6 147235259 147235331 73 + 0.759 0.535 -0.969
ENSG00000164506 E008 4.6306438 0.0071055654 3.694720e-02 0.185070792 6 147239170 147239270 101 + 0.876 0.627 -1.013
ENSG00000164506 E009 0.2447669 0.0162878646 7.690727e-01   6 147250837 147250910 74 + 0.113 0.080 -0.554
ENSG00000164506 E010 5.8876647 0.0589399238 3.954006e-01 0.680240367 6 147260615 147260749 135 + 0.893 0.782 -0.433
ENSG00000164506 E011 4.7768559 0.0030734603 3.129179e-01 0.606298199 6 147262290 147262353 64 + 0.822 0.702 -0.480
ENSG00000164506 E012 4.9316259 0.0033804089 9.342663e-01 0.981067175 6 147267084 147267167 84 + 0.759 0.767 0.031
ENSG00000164506 E013 4.7473022 0.0030721482 2.229119e-02 0.135800457 6 147278081 147278204 124 + 0.893 0.627 -1.077
ENSG00000164506 E014 3.8740883 0.0036126875 4.761397e-03 0.047839266 6 147291094 147291172 79 + 0.859 0.508 -1.487
ENSG00000164506 E015 0.0000000       6 147292251 147293385 1135 +      
ENSG00000164506 E016 6.3817869 0.0024058603 5.417455e-06 0.000201646 6 147310084 147310238 155 + 1.089 0.605 -1.895
ENSG00000164506 E017 4.0100286 0.0294344399 3.966657e-02 0.193057825 6 147311455 147311527 73 + 0.841 0.559 -1.175
ENSG00000164506 E018 5.8701381 0.0033947467 1.138494e-01 0.355264384 6 147313884 147314031 148 + 0.925 0.752 -0.674
ENSG00000164506 E019 3.6789942 0.0040322065 5.090925e-01 0.767089842 6 147314264 147314331 68 + 0.712 0.627 -0.361
ENSG00000164506 E020 3.4555880 0.0042025640 8.841104e-01 0.961044007 6 147314596 147314636 41 + 0.630 0.647 0.074
ENSG00000164506 E021 9.8047186 0.0015304728 1.432277e-01 0.402983211 6 147315515 147315735 221 + 1.099 0.968 -0.482
ENSG00000164506 E022 8.2360100 0.0044032890 5.008912e-01 0.760923415 6 147316229 147316407 179 + 0.996 0.928 -0.251
ENSG00000164506 E023 4.6604550 0.0187935175 4.415655e-01 0.717028753 6 147324959 147325084 126 + 0.802 0.702 -0.402
ENSG00000164506 E024 2.4665057 0.0251573159 9.662281e-01 0.993124964 6 147327125 147327172 48 + 0.528 0.535 0.031
ENSG00000164506 E025 2.3317824 0.0275917961 5.692400e-01 0.806276377 6 147327173 147327200 28 + 0.565 0.480 -0.402
ENSG00000164506 E026 3.1833705 0.0050867934 3.416115e-01 0.633099834 6 147327201 147327276 76 + 0.686 0.559 -0.554
ENSG00000164506 E027 0.1186381 0.0118550037 3.641318e-01   6 147328699 147328782 84 + 0.113 0.000 -10.078
ENSG00000164506 E028 3.6834839 0.0044251053 5.110001e-01 0.768369646 6 147334157 147334222 66 + 0.712 0.627 -0.361
ENSG00000164506 E029 2.8470029 0.0049222361 5.660873e-01 0.804555565 6 147339179 147339238 60 + 0.528 0.605 0.353
ENSG00000164506 E030 2.0937849 0.0725850738 9.610457e-01 0.991324440 6 147339337 147339384 48 + 0.488 0.480 -0.039
ENSG00000164506 E031 5.3239915 0.0925887374 5.847182e-01 0.815396040 6 147353323 147353373 51 + 0.736 0.823 0.346
ENSG00000164506 E032 12.7789925 0.0010342995 6.894547e-02 0.265285353 6 147359084 147359323 240 + 1.033 1.180 0.531
ENSG00000164506 E033 21.1222591 0.0079564383 5.268216e-01 0.778971960 6 147363335 147363704 370 + 1.307 1.351 0.152
ENSG00000164506 E034 12.6007255 0.0012241143 6.161090e-01 0.833481006 6 147364001 147364166 166 + 1.099 1.138 0.138
ENSG00000164506 E035 7.9497350 0.0027734899 1.222718e-01 0.369880790 6 147373731 147373842 112 + 0.841 0.995 0.584
ENSG00000164506 E036 20.1716159 0.0097724224 3.743820e-01 0.662030198 6 147382778 147382998 221 + 1.355 1.287 -0.236
ENSG00000164506 E037 103.7730675 0.0002241327 1.445669e-03 0.019860084 6 147384714 147387663 2950 + 1.958 2.039 0.269
ENSG00000164506 E038 4.2092831 0.0037135569 5.253464e-01 0.778150899 6 147387664 147387736 73 + 0.659 0.736 0.321
ENSG00000164506 E039 22.0821287 0.0007237200 2.350587e-02 0.140115564 6 147387737 147389061 1325 + 1.260 1.402 0.495
ENSG00000164506 E040 18.2416434 0.0007809219 1.721222e-02 0.114787271 6 147389062 147390476 1415 + 1.166 1.330 0.581

Help

Please Click HERE to learn more details about the results from DEXseq.