ENSG00000164587

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000312037 ENSG00000164587 No_inf pgKDN_inf RPS14 protein_coding protein_coding 2126.712 2157.103 2239.463 16.91663 42.85027 0.05405754 566.2938 315.3053 812.0023 53.83289 32.60731 1.36470648 0.2659833 0.14595 0.363650 0.217700 3.270681e-07 3.270681e-07 FALSE TRUE
ENST00000642507 ENSG00000164587 No_inf pgKDN_inf RPS14 protein_coding protein_coding 2126.712 2157.103 2239.463 16.91663 42.85027 0.05405754 265.6164 491.1508 101.2122 57.78536 43.53788 -2.27866974 0.1250667 0.22805 0.044300 -0.183750 4.699901e-01 3.270681e-07 FALSE FALSE
MSTRG.23774.4 ENSG00000164587 No_inf pgKDN_inf RPS14 protein_coding   2126.712 2157.103 2239.463 16.91663 42.85027 0.05405754 1253.7939 1312.2861 1286.2397 23.46724 34.13434 -0.02892255 0.5895500 0.60820 0.574125 -0.034075 1.448772e-01 3.270681e-07 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164587 E001 21.4726890 6.239578e-04 6.518220e-01 8.533477e-01 5 150442635 150444232 1598 - 1.336 1.364 0.099
ENSG00000164587 E002 7.5602006 1.724140e-02 2.990933e-01 5.919547e-01 5 150444233 150444237 5 - 0.987 0.875 -0.424
ENSG00000164587 E003 210.7060113 9.260526e-05 2.279963e-01 5.164617e-01 5 150444238 150444291 54 - 2.338 2.313 -0.085
ENSG00000164587 E004 536.7268760 5.179470e-05 8.043207e-01 9.273838e-01 5 150444292 150444353 62 - 2.732 2.728 -0.011
ENSG00000164587 E005 3.1020251 8.271415e-03 9.020516e-02 3.119895e-01 5 150444479 150444641 163 - 0.476 0.707 1.038
ENSG00000164587 E006 4.6241354 2.997239e-03 2.866903e-01 5.801792e-01 5 150445424 150445608 185 - 0.811 0.686 -0.509
ENSG00000164587 E007 782.3231116 3.638731e-05 8.269278e-01 9.373403e-01 5 150445609 150445685 77 - 2.892 2.894 0.007
ENSG00000164587 E008 1870.6254438 3.559687e-05 4.468859e-01 7.211216e-01 5 150446802 150446963 162 - 3.269 3.274 0.015
ENSG00000164587 E009 30.2958204 5.146604e-03 6.254840e-01 8.389034e-01 5 150446964 150447584 621 - 1.479 1.509 0.103
ENSG00000164587 E010 1271.5976687 3.315887e-05 1.863493e-01 4.642723e-01 5 150447585 150447673 89 - 3.110 3.099 -0.035
ENSG00000164587 E011 1097.2588968 2.994382e-05 9.338925e-01 9.810138e-01 5 150447674 150447735 62 - 3.040 3.040 0.002
ENSG00000164587 E012 7.2979975 4.939284e-02 2.500675e-01 5.409754e-01 5 150447736 150448832 1097 - 0.987 0.846 -0.534
ENSG00000164587 E013 1.4596413 8.772945e-03 5.291101e-01 7.805104e-01 5 150448833 150449268 436 - 0.438 0.343 -0.535
ENSG00000164587 E014 0.4914576 1.586761e-02 9.733413e-01   5 150449269 150449485 217 - 0.176 0.171 -0.050
ENSG00000164587 E015 5.7498847 2.590600e-03 2.353572e-05 7.087524e-04 5 150449486 150449491 6 - 1.020 0.532 -1.975
ENSG00000164587 E016 17.1099491 7.674032e-04 1.069238e-15 1.941694e-13 5 150449492 150449702 211 - 1.479 0.861 -2.219
ENSG00000164587 E017 669.3655585 4.546512e-05 3.234114e-03 3.652192e-02 5 150449703 150449739 37 - 2.808 2.841 0.112

Help

Please Click HERE to learn more details about the results from DEXseq.