ENSG00000164754

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000297338 ENSG00000164754 No_inf pgKDN_inf RAD21 protein_coding protein_coding 109.483 105.0892 123.1451 0.9227177 1.301255 0.2287253 79.74156 57.02742 104.377878 4.747504 7.843407 0.8719736 0.7214833 0.54220 0.847825 0.305625 0.001444432 0.001444432 FALSE TRUE
ENST00000519837 ENSG00000164754 No_inf pgKDN_inf RAD21 protein_coding protein_coding 109.483 105.0892 123.1451 0.9227177 1.301255 0.2287253 21.59201 40.80110 9.803405 4.867877 9.803405 -2.0561360 0.2037333 0.38835 0.079650 -0.308700 0.028405571 0.001444432 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164754 E001 4.6332243 3.372893e-03 6.204340e-01 8.358926e-01 8 116845934 116845939 6 - 0.780 0.721 -0.240
ENSG00000164754 E002 6.8545534 5.459794e-03 8.632719e-01 9.527896e-01 8 116845940 116845947 8 - 0.886 0.904 0.065
ENSG00000164754 E003 52.2112546 2.655556e-04 3.303430e-01 6.228533e-01 8 116845948 116846065 118 - 1.706 1.745 0.133
ENSG00000164754 E004 77.8034209 3.242747e-04 3.653860e-02 1.838556e-01 8 116846066 116846142 77 - 1.859 1.930 0.238
ENSG00000164754 E005 740.2021184 5.326167e-05 1.709530e-08 1.164164e-06 8 116846143 116846904 762 - 2.842 2.895 0.177
ENSG00000164754 E006 368.8766030 8.338223e-05 6.252365e-02 2.511676e-01 8 116846905 116847333 429 - 2.554 2.581 0.089
ENSG00000164754 E007 174.9843833 1.376243e-03 4.758161e-01 7.424263e-01 8 116847334 116847691 358 - 2.236 2.254 0.059
ENSG00000164754 E008 7.3636710 3.638537e-03 4.947772e-01 7.560864e-01 8 116847692 116848334 643 - 0.886 0.955 0.258
ENSG00000164754 E009 2.9410929 4.752498e-03 9.080521e-01 9.707195e-01 8 116848335 116848890 556 - 0.588 0.603 0.065
ENSG00000164754 E010 0.0000000       8 116848891 116848904 14 -      
ENSG00000164754 E011 0.0000000       8 116848905 116848945 41 -      
ENSG00000164754 E012 0.0000000       8 116848946 116849029 84 -      
ENSG00000164754 E013 0.0000000       8 116849030 116849054 25 -      
ENSG00000164754 E014 3.9369434 3.435354e-03 4.054818e-01 6.882318e-01 8 116849055 116850124 1070 - 0.638 0.741 0.428
ENSG00000164754 E015 4.6814813 2.957491e-03 2.678658e-01 5.613565e-01 8 116850125 116850617 493 - 0.684 0.813 0.525
ENSG00000164754 E016 54.4763137 2.247203e-03 8.775962e-01 9.584351e-01 8 116850618 116850761 144 - 1.741 1.747 0.020
ENSG00000164754 E017 29.0871488 9.618003e-04 5.969073e-01 8.229447e-01 8 116850762 116850767 6 - 1.493 1.463 -0.105
ENSG00000164754 E018 2.9448606 1.495011e-01 6.773838e-01 8.662893e-01 8 116850768 116851947 1180 - 0.560 0.629 0.306
ENSG00000164754 E019 95.2302652 2.123440e-04 4.643329e-01 7.338491e-01 8 116851948 116852096 149 - 1.995 1.971 -0.079
ENSG00000164754 E020 5.5287954 1.992953e-02 5.831889e-01 8.143722e-01 8 116852097 116852548 452 - 0.780 0.846 0.258
ENSG00000164754 E021 106.3642371 1.692318e-04 1.153886e-01 3.581176e-01 8 116852549 116852708 160 - 2.054 2.007 -0.157
ENSG00000164754 E022 2.2227467 1.885855e-02 3.160332e-01 6.089464e-01 8 116852709 116854244 1536 - 0.427 0.574 0.717
ENSG00000164754 E023 147.9932818 1.487039e-04 5.260920e-03 5.150807e-02 8 116854245 116854468 224 - 2.207 2.137 -0.233
ENSG00000164754 E024 100.2923491 1.948100e-04 2.228281e-03 2.772321e-02 8 116856166 116856288 123 - 2.050 1.957 -0.312
ENSG00000164754 E025 101.0753683 1.562168e-04 6.900814e-03 6.251066e-02 8 116856646 116856771 126 - 2.048 1.967 -0.274
ENSG00000164754 E026 0.3816610 3.175118e-02 9.635792e-02   8 116856772 116857266 495 - 0.000 0.243 12.973
ENSG00000164754 E027 134.4402142 1.294166e-03 1.183103e-02 8.972133e-02 8 116857267 116857473 207 - 2.168 2.093 -0.250
ENSG00000164754 E028 71.2746659 6.629736e-03 5.037694e-01 7.632321e-01 8 116858352 116858458 107 - 1.876 1.841 -0.118
ENSG00000164754 E029 0.3510120 5.449390e-01 3.099694e-01   8 116858459 116859046 588 - 0.235 0.000 -12.690
ENSG00000164754 E030 46.6156316 4.422696e-03 1.737198e-01 4.471665e-01 8 116861841 116861921 81 - 1.712 1.642 -0.238
ENSG00000164754 E031 23.2825548 3.954205e-03 1.696826e-01 4.417678e-01 8 116861922 116861940 19 - 1.429 1.338 -0.314
ENSG00000164754 E032 69.0705494 4.904303e-03 3.069031e-02 1.647836e-01 8 116863130 116863259 130 - 1.894 1.793 -0.339
ENSG00000164754 E033 3.4759785 4.237275e-03 4.462027e-02 2.064221e-01 8 116863260 116866231 2972 - 0.499 0.760 1.143
ENSG00000164754 E034 57.2193822 2.912539e-04 3.832031e-03 4.125285e-02 8 116866586 116866761 176 - 1.820 1.704 -0.393
ENSG00000164754 E035 0.1170040 1.168383e-02 5.640965e-01   8 116866762 116866991 230 - 0.093 0.000 -12.446
ENSG00000164754 E036 0.0000000       8 116874102 116874118 17 -      
ENSG00000164754 E037 0.2542726 2.339005e-01 2.761322e-01   8 116874119 116874205 87 - 0.000 0.176 11.730
ENSG00000164754 E038 0.0000000       8 116874206 116874249 44 -      
ENSG00000164754 E039 0.0000000       8 116874250 116874309 60 -      
ENSG00000164754 E040 1.1353211 1.647393e-02 1.213129e-02 9.113930e-02 8 116874310 116874362 53 - 0.093 0.478 3.065
ENSG00000164754 E041 1.8533574 9.625183e-03 3.931177e-01 6.781300e-01 8 116874363 116874528 166 - 0.387 0.512 0.650
ENSG00000164754 E042 0.0000000       8 116874611 116874727 117 -      
ENSG00000164754 E043 0.0000000       8 116874728 116874800 73 -      

Help

Please Click HERE to learn more details about the results from DEXseq.